# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CexoR" in publications use:'
type: software
license:
- Artistic-2.0
- GPL-2.0-only
title: 'CexoR: An R package to uncover high-resolution protein-DNA interactions in
  ChIP-exo replicates'
version: 1.43.0
doi: 10.14806/ej.21.0.837
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CexoR
abstract: Strand specific peak-pair calling in ChIP-exo replicates. The cumulative
  Skellam distribution function is used to detect significant normalised count differences
  of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery
  rate for overlapping peak-pairs across biological replicates is computed.
authors:
- family-names: Madrigal
  given-names: Pedro
  email: pmadrigal@ebi.ac.uk
  orcid: https://orcid.org/0000-0003-1959-8199
preferred-citation:
  type: article
  title: 'CexoR: an R/Bioconductor package to uncover high-resolution protein-DNA
    interactions in ChIP-exo replicates'
  authors:
  - family-names: Madrigal
    given-names: Pedro
    email: pmadrigal@ebi.ac.uk
    orcid: https://orcid.org/0000-0003-1959-8199
  year: '2015'
  journal: EMBnet.journal
  doi: 10.14806/ej.21.0.837
  url: http://journal.embnet.org/index.php/embnetjournal/article/view/837
  volume: '21'
  issue: '1'
  start: e837
repository: https://bioc.r-universe.dev
commit: 16301bb781d5378af907fb42acd1ee64e6fe2fa4
date-released: '2022-05-28'
contact:
- family-names: Madrigal
  given-names: Pedro
  email: pmadrigal@ebi.ac.uk
  orcid: https://orcid.org/0000-0003-1959-8199
references:
- type: article
  title: Identification of Transcription Factor Binding Sites in ChIP-exo using R/Bioconductor
  authors:
  - family-names: Madrigal
    given-names: Pedro
  year: '2015'
  journal: Epigenesys - Bioinformatics Protocol
  url: https://www.epigenesys.eu/en/resources/protocols/bio-informatics
  volume: '68'