Introduction | Why CanvasXpressBio? | One dataset for every figure | A heatmap from a SummarizedExperiment | A volcano plot from differential-expression results | A Kaplan-Meier survival curve | A paired boxplot with per-patient connections | Beeswarm overlays at scale | Session info
Package: CanvasXpressBio 0.99.6
Isaac Neuhaus
CanvasXpressBio: CanvasXpress Visualizations for Bioconductor Data Structures
Bridges the CanvasXpress interactive visualization library to core Bioconductor data structures. Provides a generic to render a SummarizedExperiment, and any class that extends it such as SingleCellExperiment or DESeqDataSet, as an interactive CanvasXpress heatmap that carries its row and column annotations, together with a volcano helper for differential-expression result tables. Charts are reproducible CanvasXpress widgets usable in R, R Markdown and Shiny.
Authors:
CanvasXpressBio_0.99.6.tar.gz
CanvasXpressBio_0.99.6.zip(r-4.7-any)CanvasXpressBio_0.99.6.zip(r-4.6-any)CanvasXpressBio_0.99.6.zip(r-4.5-any)
CanvasXpressBio_0.99.6.tgz(r-4.6-any)CanvasXpressBio_0.99.6.tgz(r-4.5-any)
CanvasXpressBio_0.99.6.tar.gz(r-4.7-any)CanvasXpressBio_0.99.6.tar.gz(r-4.6-any)
CanvasXpressBio_0.99.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CanvasXpressBio/json (API)
| # Install 'CanvasXpressBio' in R: |
| install.packages('CanvasXpressBio', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/neuhausi/canvasxpress/issues
softwarevisualizationgeneexpressiondifferentialexpressionrnaseqsinglecelltranscriptomicsanalyticsbioinformaticschartchartingdashdashboarddata-analyticsdata-sciencedata-visualizationgenomicsgraphsjavascriptnetworknetwork-visualizationpythonreproducible-researchshiny
Last updated from:ad50cc9e78. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 167 | ||
| linux-devel | OK | 297 | ||
| source / vignettes | OK | 213 | ||
| linux-release | OK | 224 | ||
| macos-release | OK | 186 | ||
| macos-oldrel | OK | 200 | ||
| windows-devel | OK | 274 | ||
| windows-release | OK | 228 | ||
| windows-oldrel | OK | 266 | ||
| wasm-release | OK | 115 |
Exports:cxboxplotcxplotcxsurvivalcxvolcanomakeBeeswarmDemomakeDemoSE
Dependencies:abindaskpassbase64encBiobaseBiocGenericsbslibcachemcanvasXpressclicurlDelayedArraydigestevaluatefastmapfontawesomefsgenericsGenomicRangeshighrhtmltoolshtmlwidgetshttrIRangesjquerylibjsonliteknitrlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslR6rappdirsrlangrmarkdownS4ArraysS4VectorssassSeqinfoSparseArraySummarizedExperimentsystinytexwithrxfunXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Paired boxplot with per-subject connections using CanvasXpress | cxboxplot |
| Visualize a Bioconductor object with CanvasXpress | cxplot cxplot,SummarizedExperiment-method |
| Kaplan-Meier survival plot with CanvasXpress | cxsurvival |
| Volcano plot of differential-expression results with CanvasXpress | cxvolcano |
| Build a dense single-feature SummarizedExperiment for a beeswarm demo | makeBeeswarmDemo |
| Build the demonstration SummarizedExperiment used in the vignette | makeDemoSE |