Package: CRImage 1.53.0
Henrik Failmezger
CRImage: CRImage a package to classify cells and calculate tumour cellularity
CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.
Authors:
CRImage_1.53.0.tar.gz
CRImage_1.53.0.zip(r-4.5)CRImage_1.53.0.zip(r-4.4)CRImage_1.53.0.zip(r-4.3)
CRImage_1.53.0.tgz(r-4.4-any)CRImage_1.53.0.tgz(r-4.3-any)
CRImage_1.53.0.tar.gz(r-4.5-noble)CRImage_1.53.0.tar.gz(r-4.4-noble)
CRImage_1.53.0.tgz(r-4.4-emscripten)CRImage_1.53.0.tgz(r-4.3-emscripten)
CRImage.pdf |CRImage.html✨
CRImage/json (API)
| # Install 'CRImage' in R: |
| install.packages('CRImage', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:CRImage-1.53.0(bioc 3.20)CRImage-1.52.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:8563bd58ea
Exports:calculateCellularitycalculateMeanStdTargetcalculateOtsuclassifyCellscolorCorrectionconvertHSVToRGBconvertLABToRGBconvertRGBToHSVconvertRGBToLABcorrectCopyNumbercreateBinaryImagecreateClassifierlabelCellsplotCorrectedCNprocessAperioSauvolaThresholdsegmentImage
Dependencies:abindaCGHbase64encBiobaseBiocGenericsbitopsbslibcachemclasscliclustercodetoolsdigestDNAcopye1071EBImageevaluatefastmapfftwtoolsfontawesomeforeachfsgluehighrhtmltoolshtmlwidgetsiteratorsjpegjquerylibjsonliteknitrlatticelifecyclelocfitMASSMatrixmemoisemimemulttestpngproxyR6rappdirsRCurlrlangrmarkdownsasssgeostatsurvivaltifftinytexxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| CRImage is a package to analyze images and classify cells. | CRImage-package CRImage |
| Calculation of tumour cellularity | calculateCellularity |
| Calculates Mean and Standard deviation of an image | calculateMeanStdTarget |
| Does Otsu thresholding | calculateOtsu |
| A function to classify cells | classifyCells |
| Color transfer between images. | colorCorrection |
| Conversion from HSV color space to RGB color space | convertHSVToRGB |
| Conversion of LAB colour space to RGB colour space | convertLABToRGB |
| Conversion from RGB color space to HSV color space | convertRGBToHSV |
| Converts RGB to LAB color space. | convertRGBToLAB |
| Allelic Copy Number correction for cellularity | correctCopyNumber |
| Thresholding | createBinaryImage |
| Construction of a classifier | createClassifier |
| Interactive Session for cell labeling | labelCells |
| Plot CN profiles corrected for cellularity | plotCorrectedCN |
| Cellularity Calculation of Aperio TX Scanner | processAperio |
| Do Sauvola thresholding | SauvolaThreshold |
| Segmentation of an image | segmentImage |
