Package: COSNet 1.47.0

Marco Frasca

COSNet: Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings

Package that implements the COSNet classification algorithm. The algorithm predicts node labels in partially labeled graphs where few positives are available for the class being predicted.

Authors:Marco Frasca and Giorgio Valentini -- Universita' degli Studi di Milano

COSNet_1.47.0.tar.gz
COSNet_1.47.0.zip(r-4.7)COSNet_1.47.0.zip(r-4.6)COSNet_1.47.0.zip(r-4.5)
COSNet_1.47.0.tgz(r-4.6-x86_64)COSNet_1.47.0.tgz(r-4.6-arm64)COSNet_1.47.0.tgz(r-4.5-x86_64)COSNet_1.47.0.tgz(r-4.5-arm64)
COSNet_1.47.0.tar.gz(r-4.7-arm64)COSNet_1.47.0.tar.gz(r-4.7-x86_64)COSNet_1.47.0.tar.gz(r-4.6-arm64)COSNet_1.47.0.tar.gz(r-4.6-x86_64)
COSNet_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
COSNet/json (API)

# Install 'COSNet' in R:

install.packages('COSNet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/m1frasca/cosnet_github/issues

On BioConductor:COSNet-1.47.0(bioc 3.24)COSNet-1.46.0(bioc 3.23)

graphandnetwork classification network neuralnetwork

4.38 score 1 stars 15 scripts 368 downloads 8 mentions 10 exports 0 dependencies

Last updated from:88518b6b6f. Checks:1 ERROR, 11 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	141
linux-devel-arm64	WARNING	142
linux-devel-x86_64	WARNING	153
source / vignettes	OK	214
linux-release-arm64	WARNING	170
linux-release-x86_64	WARNING	162
macos-release-arm64	WARNING	87
macos-release-x86_64	WARNING	216
macos-oldrel-arm64	WARNING	94
macos-oldrel-x86_64	WARNING	248
windows-devel	WARNING	94
windows-release	WARNING	97
windows-oldrel	WARNING	96
wasm-release	OK	118

Exports:COSNet cosnet.cross.validation find.division.not.strat find.division.strat generate_labels generate_points optimize_pos_above optimizep reg_data runSubnet

Dependencies:

An R Package for Predicting Binary Labels in Partially-Labeled Graphs

Introduction | COSNet | An Example of the Usage of COSNet for the Functional Classification of Yeast Genes with the Functional Catalogue | An Example of the Usage of COSNet for Inferring Gene Ontology Labels for Fly Genes | Usage of COSNet for Predicting Therapeutical Categories of Drugs

Rendered fromCOSNet_v.Rnwusingutils::Sweave

Last update: 2014-10-11
Started: 2014-10-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
R package for binary classification and node ranking on partially labeled graphs with unbalanced labels.	COSNet-package
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings	COSNet
Cross validation procedure for the COSNet algorithm	cosnet.cross.validation
Random partitioning of input data	find.division.not.strat
Compute a stratified random partition of the input data	find.division.strat
Generate random labels	generate_labels
Compute the points to be separated in Step 2 of COSNet algorithm (Frasca et al. 2013)	generate_points
Alternative algortihm for optimizing parameters	optimize_pos_above
Optimizing algorithm parameters	optimizep
Function to compute the regularized version of COSNet (Frasca et al. 2013)	reg_data
Realizing the network dynamics.	runSubnet