{ "_id": "6a1ad4e11d7bb097a09e44da", "Package": "COSNet", "Type": "Package", "Title": "Cost Sensitive Network for node label prediction on graphs with\nhighly unbalanced labelings", "Version": "1.47.0", "Date": "2015-11-06", "Author": "Marco Frasca and Giorgio Valentini -- Universita' degli Studi\ndi Milano", "Maintainer": "Marco Frasca", "Description": "Package that implements the COSNet classification\nalgorithm. The algorithm predicts node labels in partially\nlabeled graphs where few positives are available for the class\nbeing predicted.", "License": "GPL (>= 2)", "URL": "https://github.com/m1frasca/COSNet_GitHub", "LazyLoad": "yes", "biocViews": "GraphAndNetwork, Classification,Network, NeuralNetwork", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:11 UTC", "RemoteUrl": "https://github.com/bioc/COSNet", "RemoteRef": "HEAD", "RemoteSha": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 08:44:25 UTC", "User": "root" }, "MD5sum": "2e497ab3b36fd9048a33425a73c8424b", "_user": "bioc", "_type": "src", "_file": "COSNet_1.47.0.tar.gz", "_fileid": "7637c1888f2fcbe10e0e2ce8c1787c0464564f504d33298c57f6b6c995fb6947", "_filesize": 412314, "_sha256": "7637c1888f2fcbe10e0e2ce8c1787c0464564f504d33298c57f6b6c995fb6947", "_created": "2026-05-30T08:44:25.000Z", "_published": "2026-05-30T12:15:29.296Z", "_jobs": [ { "job": 78637388885, "time": 131, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306933230" }, { "job": 78637388911, "time": 157, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7306935654" }, { "job": 78637388950, "time": 150, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7306935003" }, { "job": 78637388908, "time": 140, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7306933890" }, { "job": 78637388913, "time": 187, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7306938487" }, { "job": 78637388898, "time": 120, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7308093189" }, { "job": 78637388903, "time": 217, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7306942908" }, { "job": 78637388907, "time": 85, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7308090599" }, { "job": 78637388901, "time": 235, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7306944362" }, { "job": 78637205917, "time": 208, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306920527" }, { "job": 78637388882, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306930573" }, { "job": 78637388906, "time": 96, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7306929979" }, { "job": 78637388889, "time": 124, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7306932586" }, { "job": 78637388884, "time": 111, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7306931336" } ], "_bioccheck": { "error": 2, "warning": 3, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/COSNet", "_commit": { "id": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380011 }, "_maintainer": { "name": "Marco Frasca", "email": "frasca@di.unimi.it", "login": "m1frasca", "description": "", "uuid": 13033634 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "bionetdata", "role": "Suggests" }, { "package": "PerfMeas", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.47.0", "bioc": "3.24" }, { "branch": "release", "version": "1.46.0", "bioc": "3.23" } ], "_topics": [ "graphandnetwork", "classification", "network", "neuralnetwork" ], "_stars": 1, "_contributors": [ { "user": "m1frasca", "count": 25, "uuid": 13033634 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 368, "source": "https://www.bioconductor.org/packages/stats/bioc/COSNet" }, "_mentions": 8, "_devurl": "https://github.com/m1frasca/cosnet_github", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/COSNet.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "COSNet", "cosnet.cross.validation", "find.division.not.strat", "find.division.strat", "generate_labels", "generate_points", "optimize_pos_above", "optimizep", "reg_data", "runSubnet" ], "_help": [ { "page": "COSNet-package", "title": "R package for binary classification and node ranking on partially labeled graphs with unbalanced labels.", "topics": [ "COSNet-package" ] }, { "page": "COSNet", "title": "Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings", "topics": [ "COSNet" ] }, { "page": "cosnet.cross.validation", "title": "Cross validation procedure for the COSNet algorithm", "topics": [ "cosnet.cross.validation" ] }, { "page": "find.division.not.strat", "title": "Random partitioning of input data", "topics": [ "find.division.not.strat" ] }, { "page": "find.division.strat", "title": "Compute a stratified random partition of the input data", "topics": [ "find.division.strat" ] }, { "page": "generate_labels", "title": "Generate random labels", "topics": [ "generate_labels" ] }, { "page": "generate_points", "title": "Compute the points to be separated in Step 2 of COSNet algorithm (Frasca et al. 2013)", "topics": [ "generate_points" ] }, { "page": "optimize_pos_above", "title": "Alternative algortihm for optimizing parameters", "topics": [ "optimize_pos_above" ] }, { "page": "optimizep", "title": "Optimizing algorithm parameters", "topics": [ "optimizep" ] }, { "page": "reg_data", "title": "Function to compute the regularized version of COSNet (Frasca et al. 2013)", "topics": [ "reg_data" ] }, { "page": "runSubnet", "title": "Realizing the network dynamics.", "topics": [ "runSubnet" ] } ], "_rundeps": [], "_vignettes": [ { "source": "COSNet_v.Rnw", "filename": "COSNet_v.pdf", "title": "An R Package for Predicting Binary Labels in Partially-Labeled Graphs", "engine": "utils::Sweave", "headings": [], "created": "2014-10-11 00:28:51", "modified": "2014-10-11 00:28:51", "commits": 1 } ], "_score": 4.459392487759231, "_indexed": true, "_nocasepkg": "cosnet", "_universes": [ "bioc", "m1frasca" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.47.0", "date": "2026-05-30T08:47:03.000Z", "distro": "noble", "arch": "aarch64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "ec9ea2efed3f8b562a37880c4c2b1230fccb5ca89dedf877355d52f26e938636", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.7.0", "os": "linux", "version": "1.47.0", "date": "2026-05-30T08:46:49.000Z", "distro": "noble", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "e2a9b13902db5286e388069c37bfc5a9b8ec3a61257c0f26cd347f005b116e07", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "linux", "version": "1.47.0", "date": "2026-05-30T08:46:43.000Z", "distro": "noble", "arch": "aarch64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "6eb8bbc390fe25058d9799028c49e4167122e783814b38f8f3c40cbdc8bbcf61", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "linux", "version": "1.47.0", "date": "2026-05-30T08:47:28.000Z", "distro": "noble", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "e88ced5c83cb6c5b0c03049a6e98ff9cea9f7711066d379cf31a01e1bbef6998", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.5.3", "os": "mac", "version": "1.47.0", "date": "2026-05-30T12:14:47.000Z", "arch": "aarch64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "6a02db69e372a2b71063a8521b8fcb8aec6f3455333c8b0534b97dc957ca98f1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.5.3", "os": "mac", "version": "1.47.0", "date": "2026-05-30T08:47:53.000Z", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "f5d7e1b8fdc572276e494844d47d0d2d935e4d96fe5999bf57a2d54c0f2256b7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "mac", "version": "1.47.0", "date": "2026-05-30T12:14:24.000Z", "arch": "aarch64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "5c55547d646339216c0f9761d743292a564fa74897e005e698a89e68ac77f14b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "mac", "version": "1.47.0", "date": "2026-05-30T08:47:56.000Z", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "cdae112cc840ec71a85c3d76eb08ffa55c2ffa5f8f48d412a6f13902d8a2408b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "wasm", "version": "1.47.0", "date": "2026-05-30T08:46:23.000Z", "arch": "emscripten", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "c3eb42b73972ad54130a31a3793f94feba296d26c1bb2b780219544e956e61d4", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.7.0", "os": "win", "version": "1.47.0", "date": "2026-05-30T08:45:45.000Z", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "326830b6afb2487606dd90e73160a0ea5e662e5d3bc88d7afda7a2cc22e9a41b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.5.3", "os": "win", "version": "1.47.0", "date": "2026-05-30T08:45:59.000Z", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "320c36e05c014d7d65dd9490bb0111189ce06d8160cbf5113aaa9e4a0f1cd36b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" }, { "r": "4.6.0", "os": "win", "version": "1.47.0", "date": "2026-05-30T08:46:00.000Z", "arch": "x86_64", "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752", "fileid": "fc7aa42746f804019c54ba6b22b0330dcd92a684c6a6338d4c600bb3a0bb0c19", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679478513" } ] }