{
  "_id": "6a4ddf72d253724d3f6dd88d",
  "Package": "COSNet",
  "Type": "Package",
  "Title": "Cost Sensitive Network for node label prediction on graphs with\nhighly unbalanced labelings",
  "Version": "1.47.0",
  "Date": "2015-11-06",
  "Author": "Marco Frasca and Giorgio Valentini -- Universita' degli Studi\ndi Milano",
  "Maintainer": "Marco Frasca<frasca@di.unimi.it>",
  "Description": "Package that implements the COSNet classification\nalgorithm. The algorithm predicts node labels in partially\nlabeled graphs where few positives are available for the class\nbeing predicted.",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/m1frasca/COSNet_GitHub",
  "LazyLoad": "yes",
  "biocViews": "GraphAndNetwork, Classification,Network, NeuralNetwork",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:40:11 UTC",
  "RemoteUrl": "https://github.com/bioc/COSNet",
  "RemoteRef": "HEAD",
  "RemoteSha": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-08 05:21:21 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "COSNet_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/59c454901276a6bf475e5cb19898d8994e3dff2e42f0ae53d6ae24bbe9bc553d",
  "_filesize": 415690,
  "_sha256": "59c454901276a6bf475e5cb19898d8994e3dff2e42f0ae53d6ae24bbe9bc553d",
  "_expires": "2026-10-16T05:26:08.000Z",
  "_created": "2026-07-08T05:21:21.000Z",
  "_published": "2026-07-08T05:26:10.200Z",
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 11
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545",
  "_status": "success",
  "_upstream": "https://github.com/bioc/COSNet",
  "_commit": {
    "id": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380011
  },
  "_maintainer": {
    "name": "Marco Frasca",
    "email": "frasca@di.unimi.it",
    "login": "m1frasca",
    "description": "",
    "uuid": 13033634
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85793563981,
      "time": 141,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8158935001"
    },
    {
      "job": 85793563999,
      "time": 142,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8158935991"
    },
    {
      "job": 85793564002,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8158938146"
    },
    {
      "job": 85793564028,
      "time": 170,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8158942963"
    },
    {
      "job": 85793564019,
      "time": 162,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8158940637"
    },
    {
      "job": 85793564041,
      "time": 94,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8158923532"
    },
    {
      "job": 85793564053,
      "time": 248,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8158963330"
    },
    {
      "job": 85793563992,
      "time": 87,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8158921437"
    },
    {
      "job": 85793564000,
      "time": 216,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8158953427"
    },
    {
      "job": 85793112743,
      "time": 214,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8158899253"
    },
    {
      "job": 85793563962,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8158929423"
    },
    {
      "job": 85793564003,
      "time": 94,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8158923784"
    },
    {
      "job": 85793563982,
      "time": 96,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8158924005"
    },
    {
      "job": 85793563995,
      "time": 97,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8158924327"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "bionetdata",
      "role": "Suggests"
    },
    {
      "package": "PerfMeas",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "graphandnetwork",
    "classification",
    "network",
    "neuralnetwork"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "m1frasca",
      "count": 25,
      "uuid": 13033634
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 368,
    "source": "https://www.bioconductor.org/packages/stats/bioc/COSNet"
  },
  "_mentions": 8,
  "_devurl": "https://github.com/m1frasca/cosnet_github",
  "_searchresults": 15,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/COSNet.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "COSNet",
    "cosnet.cross.validation",
    "find.division.not.strat",
    "find.division.strat",
    "generate_labels",
    "generate_points",
    "optimize_pos_above",
    "optimizep",
    "reg_data",
    "runSubnet"
  ],
  "_help": [
    {
      "page": "COSNet-package",
      "title": "R package for binary classification and node ranking on partially labeled graphs with unbalanced labels.",
      "topics": [
        "COSNet-package"
      ]
    },
    {
      "page": "COSNet",
      "title": "Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings",
      "topics": [
        "COSNet"
      ]
    },
    {
      "page": "cosnet.cross.validation",
      "title": "Cross validation procedure for the COSNet algorithm",
      "topics": [
        "cosnet.cross.validation"
      ]
    },
    {
      "page": "find.division.not.strat",
      "title": "Random partitioning of input data",
      "topics": [
        "find.division.not.strat"
      ]
    },
    {
      "page": "find.division.strat",
      "title": "Compute a stratified random partition of the input data",
      "topics": [
        "find.division.strat"
      ]
    },
    {
      "page": "generate_labels",
      "title": "Generate random labels",
      "topics": [
        "generate_labels"
      ]
    },
    {
      "page": "generate_points",
      "title": "Compute the points to be separated in Step 2 of COSNet algorithm (Frasca et al. 2013)",
      "topics": [
        "generate_points"
      ]
    },
    {
      "page": "optimize_pos_above",
      "title": "Alternative algortihm for optimizing parameters",
      "topics": [
        "optimize_pos_above"
      ]
    },
    {
      "page": "optimizep",
      "title": "Optimizing algorithm parameters",
      "topics": [
        "optimizep"
      ]
    },
    {
      "page": "reg_data",
      "title": "Function to compute the regularized version of COSNet (Frasca et al. 2013)",
      "topics": [
        "reg_data"
      ]
    },
    {
      "page": "runSubnet",
      "title": "Realizing the network dynamics.",
      "topics": [
        "runSubnet"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "COSNet_v.Rnw",
      "filename": "COSNet_v.pdf",
      "title": "An R Package for Predicting Binary Labels in Partially-Labeled Graphs",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "COSNet",
        "An Example of the Usage of COSNet for the Functional Classification of Yeast Genes with the Functional Catalogue",
        "An Example of the Usage of COSNet for Inferring Gene Ontology Labels for Fly Genes",
        "Usage of COSNet for Predicting Therapeutical Categories of Drugs"
      ],
      "created": "2014-10-11 00:28:51",
      "modified": "2014-10-11 00:28:51",
      "commits": 1
    }
  ],
  "_score": 4.380211241711606,
  "_indexed": true,
  "_nocasepkg": "cosnet",
  "_universes": [
    "bioc",
    "m1frasca"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-08T05:23:48.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/367a7d2149086f5f5aeab3bd8450f22e385a3826854f01295a1a716b664093c3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-08T05:23:51.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/461162f53ffca2134def23e08bb167a6e058ed96d5eb0998c9e7aa71acdb035b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-08T05:24:14.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/88857b21a76d884eb77d586ebc8392b1a9fae415f24de68dd0ff385308973194",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-08T05:23:59.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/b6de777c40f7c1720fb8a7357166a951d945a643d1e7fae0bcfb0507e0a4bfca",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-08T05:22:54.000Z",
      "arch": "aarch64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/48cdbdf960a78fe83e0742ec27604e140b1c052430953cd8d621d397a67dd648",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-08T05:24:45.000Z",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/9bf0b462bcf361306eb94cb93bee071ef4da01ddf54ea29af67c1993ea35192b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-08T05:22:45.000Z",
      "arch": "aarch64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/9da75249587a6318174746c2f89916998eb0498109ae64be66bb24f932ee9e83",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-08T05:24:22.000Z",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/d07f5600edd3f3715e8bedc087d2c4a25b3a606e3b1ae5ffb6b8ddd64cfca5d7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-08T05:23:32.000Z",
      "arch": "emscripten",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/9329507ed6da9477184ed30a322ef4b2dc3f40d78a2dab3d887d674556736b62",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-08T05:22:39.000Z",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/6f18955af69f2275b58cd5ebb187ddc96d9f6b459c2cb43527cd72d0eddc1d63",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-08T05:22:42.000Z",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/e10f035faf593818391584b8e4995e1488faa92e21d4e58daa47bd14cdb65d74",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-08T05:22:40.000Z",
      "arch": "x86_64",
      "commit": "88518b6b6f351d2ee367cb83e97f2afde4fcb752",
      "fileid": "https://r2.ropensci.org/498fe5de78085f13f95ebcb029c5c0606091406c870d6363d7c085a5fab2d9c3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28919401545"
    }
  ]
}