Introduction | Installation | Load packages | Available Resources | Accessing data resources | Reading example data | Session info
Package: CLAMPData 0.99.5
Marc Subirana-Granés
CLAMPData: Experiment data for CLAMP package
Curated CLAMP resources (latent variables, loadings, priors, and example matrices) for use with the CLAMP package, distributed via ExperimentHub.
Authors:
CLAMPData_0.99.5.tar.gz
CLAMPData_0.99.5.tar.gz(r-4.7-any)CLAMPData_0.99.5.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CLAMPData/json (API)
| # Install 'CLAMPData' in R: |
| install.packages('CLAMPData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pivlab/clampdata/issues
On BioConductor:CLAMPData-0.99.5(data/experiment 3.24)
experimenthubexperimentdatarnaseqdataexpressiondatadatapkg
Last updated from:869b631751. Checks:1 WARNING, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 143 | ||
| linux-devel | OK | 264 | ||
| source / vignettes | OK | 303 | ||
| linux-release | OK | 266 |
Exports:clamp_h5_schemaGSE164416_DP_htseq_counts_txt_gzhuman_gene_v2_5_alz_h5islets_metadata_csvlist_clamp_dataread_clamp_alz_expressionread_islet_countsread_islet_metadatavalidate_clamp_h5
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Expected HDF5 schema for CLAMP expression files | clamp_h5_schema |
| GSE164416_DP_htseq_counts_txt_gz | GSE164416_DP_htseq_counts_txt_gz |
| human_gene_v2_5_alz_h5 | human_gene_v2_5_alz_h5 |
| islets_metadata_csv | islets_metadata_csv |
| List available CLAMPData datasets | list_clamp_data |
| Load the Alzheimer expression matrix | read_clamp_alz_expression |
| Load islet count table | read_islet_counts |
| Load islet sample metadata | read_islet_metadata |
| Validate a CLAMP HDF5 file | validate_clamp_h5 |