Package: CENTREprecomputed 1.3.0

Sara Lopez Ruiz de Vargas

CENTREprecomputed: Hub package for the precomputed data of CENTRE and example data

Interface and documentation for the Experiment Hub records needed by the CENTRE Bioconductor software package. The Experiment Hub records contains the precomputed fisher combined p-values, CRUP correlations. Additionally, the records hold ChIP-seq and RNA-seq data used for the example of the software package.

Authors:Sara Lopez Ruiz de Vargas [aut, cre]

CENTREprecomputed_1.3.0.tar.gz
CENTREprecomputed_1.3.0.tar.gz(r-4.7-any)CENTREprecomputed_1.3.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CENTREprecomputed/json (API)

# Install 'CENTREprecomputed' in R:
install.packages('CENTREprecomputed', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/slrvv/centreprecomputed/issues

On BioConductor:CENTREprecomputed-1.3.0(data/experiment 3.24)CENTREprecomputed-1.2.0(data/experiment 3.23)

experimentdatapackagetypedataexperimenthubrnaseqdatachipseqdatachiponchipdatadatapkg

3.00 score 2 scripts 2 exports 57 dependencies

Last updated from:a54c32dbcc. Checks:1 WARNING, 3 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING147
linux-develERROR240
source / vignettesERROR218
linux-releaseERROR270

Exports:fetch_data_precomptables

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Database for the CENTRE precomputed dataCENTREprecompDb CENTREprecompDb-class dbconn show tables
Fetch data from the CENTREprecompDb databasefetch_data_precomp