Package: CCPROMISE 1.33.0

Xueyuan Cao

CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Authors:Xueyuan Cao <[email protected]> and Stanley.pounds <[email protected]>

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CCPROMISE.pdf |CCPROMISE.html✨
CCPROMISE/json (API)

# Install 'CCPROMISE' in R:
install.packages('CCPROMISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • exmplESet - Example of Conceptual Expression Set
  • exmplGeneSet - Example of Conceptual Gene Annotation
  • exmplMSet - Example of Conceptual Methylation Set
  • exmplPat - Example of Conceptual Phenotype Pattern Definition Set

On BioConductor:CCPROMISE-1.33.0(bioc 3.21)CCPROMISE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraygeneexpression

3.30 score 1 scripts 197 downloads 5 exports 45 dependencies

Last updated 3 months agofrom:941008abdb. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 30 2024
R-4.5-winWARNINGDec 31 2024
R-4.5-linuxWARNINGDec 30 2024
R-4.4-winWARNINGDec 31 2024
R-4.4-macWARNINGDec 30 2024
R-4.3-winWARNINGDec 31 2024
R-4.3-macWARNINGDec 30 2024

Exports:CANNCCPROMISEPrbCorPrbPROMISEPROMISE2

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemCCPclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngPROMISER6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVector

An introduction to CCPROMISE

Rendered fromCCPROMISE.Rnwusingutils::Sweaveon Dec 30 2024.

Last update: 2016-10-16
Started: 2016-10-16