Package: CCPROMISE 1.39.0

Xueyuan Cao

CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Authors:Xueyuan Cao <[email protected]> and Stanley.pounds <[email protected]>

CCPROMISE_1.39.0.tar.gz
CCPROMISE_1.39.0.zip(r-4.7)CCPROMISE_1.39.0.zip(r-4.6)CCPROMISE_1.39.0.zip(r-4.5)
CCPROMISE_1.39.0.tgz(r-4.6-any)CCPROMISE_1.39.0.tgz(r-4.5-any)
CCPROMISE_1.39.0.tar.gz(r-4.7-any)CCPROMISE_1.39.0.tar.gz(r-4.6-any)
CCPROMISE_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CCPROMISE/json (API)

# Install 'CCPROMISE' in R:

install.packages('CCPROMISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

exmplESet - Example of Conceptual Expression Set
exmplGeneSet - Example of Conceptual Gene Annotation
exmplMSet - Example of Conceptual Methylation Set
exmplPat - Example of Conceptual Phenotype Pattern Definition Set

On BioConductor:CCPROMISE-1.39.0(bioc 3.24)CCPROMISE-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray geneexpression

3.30 score 1 scripts 5 exports 42 dependencies

Last updated from:f503800072. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	161
linux-devel-x86_64	WARNING	299
source / vignettes	OK	261
linux-release-x86_64	WARNING	250
macos-release-arm64	WARNING	145
macos-oldrel-arm64	WARNING	200
windows-devel	WARNING	185
windows-release	WARNING	172
windows-oldrel	WARNING	168
wasm-release	OK	122

Exports:CANN CCPROMISE PrbCor PrbPROMISE PROMISE2

Dependencies:annotate AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem CCP cli cpp11 crayon curl DBI fastmap generics glue graph GSEABase httr IRanges jsonlite KEGGREST lifecycle memoise mime openssl pkgconfig png PROMISE R6 rlang RSQLite S4Vectors Seqinfo sys vctrs XML xtable XVector

An introduction to CCPROMISE

Introduction | Requirements | CCPROMISE Analysis

Rendered fromCCPROMISE.Rnwusingutils::Sweave

Last update: 2016-10-16
Started: 2016-10-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
PRojection Onto the Most Interesting Statistical Evidence with Canonical Correlation	CCPROMISE-package
Canonical Correlation of Two Sets of Genomic Data	CANN
PROMISE Analysis with Canonical Correlation for Two Forms of Genomic Data	CCPROMISE
Example of Conceptual Expression Set	exmplESet
Example of Conceptual Gene Annotation	exmplGeneSet
Example of Conceptual Methylation Set	exmplMSet
Example of Conceptual Phenotype Pattern Definition Set	exmplPat
Probe Level Correlation of Two Sets of Genomic Data	PrbCor
PROMISE Analysis with Two Forms of Genomic Data at Probe Level	PrbPROMISE
PROMISE Analysis of Two Genomic Sets	PROMISE2