Package: CCPROMISE 1.33.0

Xueyuan Cao

CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Authors:Xueyuan Cao <[email protected]> and Stanley.pounds <[email protected]>

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CCPROMISE.pdf |CCPROMISE.html✨
CCPROMISE/json (API)

# Install 'CCPROMISE' in R:
install.packages('CCPROMISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • exmplESet - Example of Conceptual Expression Set
  • exmplGeneSet - Example of Conceptual Gene Annotation
  • exmplMSet - Example of Conceptual Methylation Set
  • exmplPat - Example of Conceptual Phenotype Pattern Definition Set

On BioConductor:CCPROMISE-1.33.0(bioc 3.21)CCPROMISE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraygeneexpression

3.30 score 1 scripts 221 downloads 5 exports 45 dependencies

Last updated 4 months agofrom:941008abdb. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 27 2025
R-4.5-winWARNINGJan 27 2025
R-4.5-macWARNINGJan 27 2025
R-4.5-linuxWARNINGJan 27 2025
R-4.4-winWARNINGJan 27 2025
R-4.4-macWARNINGJan 27 2025
R-4.3-winWARNINGJan 27 2025
R-4.3-macWARNINGJan 27 2025

Exports:CANNCCPROMISEPrbCorPrbPROMISEPROMISE2

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemCCPclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngPROMISER6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVector

An introduction to CCPROMISE

Rendered fromCCPROMISE.Rnwusingutils::Sweaveon Jan 27 2025.

Last update: 2016-10-16
Started: 2016-10-16