Package: CCPROMISE 1.33.0

Xueyuan Cao

CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Authors:Xueyuan Cao <[email protected]> and Stanley.pounds <[email protected]>

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CCPROMISE.pdf |CCPROMISE.html✨
CCPROMISE/json (API)

# Install 'CCPROMISE' in R:
install.packages('CCPROMISE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • exmplESet - Example of Conceptual Expression Set
  • exmplGeneSet - Example of Conceptual Gene Annotation
  • exmplMSet - Example of Conceptual Methylation Set
  • exmplPat - Example of Conceptual Phenotype Pattern Definition Set

On BioConductor:CCPROMISE-1.33.0(bioc 3.21)CCPROMISE-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraygeneexpression

3.30 score 1 scripts 197 downloads 5 exports 46 dependencies

Last updated 23 days agofrom:941008abdb. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:CANNCCPROMISEPrbCorPrbPROMISEPROMISE2

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemCCPclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngPROMISER6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVectorzlibbioc

An introduction to CCPROMISE

Rendered fromCCPROMISE.Rnwusingutils::Sweaveon Oct 31 2024.

Last update: 2016-10-16
Started: 2016-10-16