{ "_id": "6a49493ea788432aeabf47ac", "Package": "CCPROMISE", "Type": "Package", "Title": "PROMISE analysis with Canonical Correlation for Two Forms of\nHigh Dimensional Genetic Data", "Version": "1.39.0", "Author": "Xueyuan Cao and Stanley.pounds\n", "Maintainer": "Xueyuan Cao ", "Description": "Perform Canonical correlation between two forms of high\ndemensional genetic data, and associate the first compoent of\neach form of data with a specific biologically interesting\npattern of associations with multiple endpoints. A probe level\nanalysis is also implemented.", "License": "GPL (>= 2)", "biocViews": "Microarray, GeneExpression", "LazyLoad": "yes", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:44:38 UTC", "RemoteUrl": "https://github.com/bioc/CCPROMISE", "RemoteRef": "HEAD", "RemoteSha": "f50380007207aa57a37773d17191e6fa5a5c48b9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 14:04:46 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "CCPROMISE_1.39.0.tar.gz", "_fileid": "https://r2.ropensci.org/e7e6fdb904d68029a6facdaad7313cc4ecbab63e55f6a2970f1e2336b28931ae", "_filesize": 1200527, "_sha256": "e7e6fdb904d68029a6facdaad7313cc4ecbab63e55f6a2970f1e2336b28931ae", "_expires": "2026-10-12T17:56:12.000Z", "_created": "2026-07-03T14:04:46.000Z", "_published": "2026-07-04T17:56:14.802Z", "_bioccheck": { "error": 2, "warning": 2, "note": 14 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874", "_status": "success", "_upstream": "https://github.com/bioc/CCPROMISE", "_commit": { "id": "f50380007207aa57a37773d17191e6fa5a5c48b9", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380278 }, "_maintainer": { "name": "Xueyuan Cao", "email": "xueyuan.cao@stjude.org", "login": "xueyuancao", "description": "", "uuid": 20522926 }, "_distro": "resolute", "_jobs": [ { "job": 85154113816, "time": 161, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8068564245" }, { "job": 85154113937, "time": 299, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8068613879" }, { "job": 85154113824, "time": 250, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8068596695" }, { "job": 85154113730, "time": 200, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8068578552" }, { "job": 85154113802, "time": 145, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8068558608" }, { "job": 85154113502, "time": 261, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8068505330" }, { "job": 85154113691, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8068551025" }, { "job": 85154114108, "time": 185, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "8068572539" }, { "job": 85154113737, "time": 168, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "8068566916" }, { "job": 85154114002, "time": 172, "config": "windows-release", "r": "4.6.1", "check": "WARNING", "artifact": "8068568309" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "CCP", "role": "Depends" }, { "package": "PROMISE", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "GSEABase", "role": "Depends" }, { "package": "utils", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23" } ], "_topics": [ "microarray", "geneexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/CCPROMISE.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "CANN", "CCPROMISE", "PrbCor", "PrbPROMISE", "PROMISE2" ], "_datasets": [ { "name": "exmplESet", "title": "Example of Conceptual Expression Set", "object": "exmplESet", "file": "exmplESet.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplGeneSet", "title": "Example of Conceptual Gene Annotation", "object": "exmplGeneSet", "file": "exmplGeneSet.rda", "class": [ "GeneSetCollection" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplMSet", "title": "Example of Conceptual Methylation Set", "object": "exmplMSet", "file": "exmplMSet.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplPat", "title": "Example of Conceptual Phenotype Pattern Definition Set", "object": "exmplPat", "file": "exmplPat.rda", "class": [ "data.frame" ], "fields": [ "stat.coef", "stat.func", "endpt.vars" ], "rows": 3, "table": true, "tojson": true } ], "_help": [ { "page": "CCPROMISE-package", "title": "PRojection Onto the Most Interesting Statistical Evidence with Canonical Correlation", "topics": [ "CCPROMISE-package" ] }, { "page": "CANN", "title": "Canonical Correlation of Two Sets of Genomic Data", "topics": [ "CANN" ] }, { "page": "CCPROMISE", "title": "PROMISE Analysis with Canonical Correlation for Two Forms of Genomic Data", "topics": [ "CCPROMISE" ] }, { "page": "exmplESet", "title": "Example of Conceptual Expression Set", "topics": [ "exmplESet" ] }, { "page": "exmplGeneSet", "title": "Example of Conceptual Gene Annotation", "topics": [ "exmplGeneSet" ] }, { "page": "exmplMSet", "title": "Example of Conceptual Methylation Set", "topics": [ "exmplMSet" ] }, { "page": "exmplPat", "title": "Example of Conceptual Phenotype Pattern Definition Set", "topics": [ "exmplPat" ] }, { "page": "PrbCor", "title": "Probe Level Correlation of Two Sets of Genomic Data", "topics": [ "PrbCor" ] }, { "page": "PrbPROMISE", "title": "PROMISE Analysis with Two Forms of Genomic Data at Probe Level", "topics": [ "PrbPROMISE" ] }, { "page": "PROMISE2", "title": "PROMISE Analysis of Two Genomic Sets", "topics": [ "PROMISE2" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "CCP", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "graph", "GSEABase", "httr", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "PROMISE", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "CCPROMISE.Rnw", "filename": "CCPROMISE.pdf", "title": "An introduction to CCPROMISE", "engine": "utils::Sweave", "headings": [ "Introduction", "Requirements", "CCPROMISE Analysis" ], "created": "2016-10-16 22:39:32", "modified": "2016-10-16 22:39:32", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "ccpromise", "_universes": [ "bioc", "xueyuancao" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.39.0", "date": "2026-07-03T14:08:21.000Z", "distro": "resolute", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/f8ef3f868f92620a0f4f63ddb11bfb54ed45a887a089a6d0ea3e4ca2658c4b8d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.6.1", "os": "linux", "version": "1.39.0", "date": "2026-07-03T14:07:35.000Z", "distro": "resolute", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/05fbe7a6de0c05b2e9f371aa6c041bdfd5794035382fe440f05984c98afa8f78", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.5.3", "os": "mac", "version": "1.39.0", "date": "2026-07-03T14:06:39.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/6277bacb170c3f9bdaf415e4ff026447e0c85c169caf454c4bd5c1ac3f7d4fd3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.6.1", "os": "mac", "version": "1.39.0", "date": "2026-07-03T14:06:28.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/5814063627073d40f5efbaf71eaf5e5892222dfadeba65d391a747908ec8f0ab", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.6.0", "os": "wasm", "version": "1.39.0", "date": "2026-07-03T14:07:14.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/0d7a2b3b13d74e5c9b6cb102eea1d03f267e64231cbb3361f2e485043ac4a65e", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.7.0", "os": "win", "version": "1.39.0", "date": "2026-07-03T14:06:10.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/cf655e7c08d6acd9d3db0c764b19d6398c0cbbef37f8afa3d620525126f7df88", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.5.3", "os": "win", "version": "1.39.0", "date": "2026-07-03T14:06:08.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/f63d1fcb14d78680641789b276696f71af62d68cd78a9928ce3da6f2292afa58", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" }, { "r": "4.6.1", "os": "win", "version": "1.39.0", "date": "2026-07-03T14:06:10.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/a984013a502c558f9349d1793e11b786e13586c0686e3561daf2b6b9ff451f51", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28665362874" } ] }