{ "_id": "6adf04f5ad2d4c5eb63d30b1", "Package": "CCPROMISE", "Type": "Package", "Title": "PROMISE analysis with Canonical Correlation for Two Forms of\nHigh Dimensional Genetic Data", "Version": "1.39.0", "Author": "Xueyuan Cao and Stanley.pounds\n", "Maintainer": "Xueyuan Cao ", "Description": "Perform Canonical correlation between two forms of high\ndemensional genetic data, and associate the first compoent of\neach form of data with a specific biologically interesting\npattern of associations with multiple endpoints. A probe level\nanalysis is also implemented.", "License": "GPL (>= 2)", "biocViews": "Microarray, GeneExpression", "LazyLoad": "yes", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:44:38 UTC", "RemoteUrl": "https://github.com/bioc/CCPROMISE", "RemoteRef": "HEAD", "RemoteSha": "f50380007207aa57a37773d17191e6fa5a5c48b9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-26 07:01:58 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "CCPROMISE_1.39.0.tar.gz", "_fileid": "https://r2.ropensci.org/eb75bc7d4beffc7c3ffc38f624ad3f1d45be550161ea888d45a8868a1ad782e8", "_filesize": 1199954, "_sha256": "eb75bc7d4beffc7c3ffc38f624ad3f1d45be550161ea888d45a8868a1ad782e8", "_expires": "2027-02-03T07:44:51.000Z", "_created": "2026-10-26T07:01:58.000Z", "_published": "2026-10-26T07:44:53.450Z", "_upstream": "https://github.com/bioc/CCPROMISE", "_status": "success", "_maintainer": { "name": "Xueyuan Cao", "email": "xueyuan.cao@stjude.org", "login": "xueyuancao", "description": "", "uuid": 20522926 }, "_jobs": [ { "job": 121441335383, "time": 132, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12632389467" }, { "job": 121441335278, "time": 272, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12633525138" }, { "job": 121441335326, "time": 255, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12632409827" }, { "job": 121441335276, "time": 225, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "12634687416" }, { "job": 121441335341, "time": 208, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12634712378" }, { "job": 121439969850, "time": 265, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12632862019" }, { "job": 121441335209, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12632553960" }, { "job": 121441335408, "time": 171, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12632474387" }, { "job": 121441335294, "time": 164, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12632998526" }, { "job": 121441335298, "time": 166, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12633337718" } ], "_bioccheck": { "error": 2, "warning": 2, "note": 15 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298", "_commit": { "id": "f50380007207aa57a37773d17191e6fa5a5c48b9", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380278 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "CCP", "role": "Depends" }, { "package": "PROMISE", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "GSEABase", "role": "Depends" }, { "package": "utils", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "microarray", "geneexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 479, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 538, "source": "https://www.bioconductor.org/packages/stats/bioc/CCPROMISE" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/CCPROMISE.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "CANN", "CCPROMISE", "PrbCor", "PrbPROMISE", "PROMISE2" ], "_datasets": [ { "name": "exmplESet", "title": "Example of Conceptual Expression Set", "object": "exmplESet", "file": "exmplESet.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplGeneSet", "title": "Example of Conceptual Gene Annotation", "object": "exmplGeneSet", "file": "exmplGeneSet.rda", "class": [ "GeneSetCollection" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplMSet", "title": "Example of Conceptual Methylation Set", "object": "exmplMSet", "file": "exmplMSet.rda", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "exmplPat", "title": "Example of Conceptual Phenotype Pattern Definition Set", "object": "exmplPat", "file": "exmplPat.rda", "class": [ "data.frame" ], "fields": [ "stat.coef", "stat.func", "endpt.vars" ], "rows": 3, "table": true, "tojson": true } ], "_help": [ { "page": "CCPROMISE-package", "title": "PRojection Onto the Most Interesting Statistical Evidence with Canonical Correlation", "topics": [ "CCPROMISE-package" ] }, { "page": "CANN", "title": "Canonical Correlation of Two Sets of Genomic Data", "topics": [ "CANN" ] }, { "page": "CCPROMISE", "title": "PROMISE Analysis with Canonical Correlation for Two Forms of Genomic Data", "topics": [ "CCPROMISE" ] }, { "page": "exmplESet", "title": "Example of Conceptual Expression Set", "topics": [ "exmplESet" ] }, { "page": "exmplGeneSet", "title": "Example of Conceptual Gene Annotation", "topics": [ "exmplGeneSet" ] }, { "page": "exmplMSet", "title": "Example of Conceptual Methylation Set", "topics": [ "exmplMSet" ] }, { "page": "exmplPat", "title": "Example of Conceptual Phenotype Pattern Definition Set", "topics": [ "exmplPat" ] }, { "page": "PrbCor", "title": "Probe Level Correlation of Two Sets of Genomic Data", "topics": [ "PrbCor" ] }, { "page": "PrbPROMISE", "title": "PROMISE Analysis with Two Forms of Genomic Data at Probe Level", "topics": [ "PrbPROMISE" ] }, { "page": "PROMISE2", "title": "PROMISE Analysis of Two Genomic Sets", "topics": [ "PROMISE2" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "CCP", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "graph", "GSEABase", "httr", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "PROMISE", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "CCPROMISE.Rnw", "filename": "CCPROMISE.pdf", "title": "An introduction to CCPROMISE", "engine": "utils::Sweave", "headings": [ "Introduction", "Requirements", "CCPROMISE Analysis" ], "created": "2016-10-16 22:39:32", "modified": "2016-10-16 22:39:32", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "ccpromise", "_universes": [ "bioc", "xueyuancao" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.39.0", "date": "2026-10-26T07:05:11.000Z", "distro": "resolute", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/2ab48bd508110cb83d62b99e4d5bf7bd7e4b09ff0d067b5f5083446666a33383", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.6.1", "os": "linux", "version": "1.39.0", "date": "2026-10-26T07:04:52.000Z", "distro": "resolute", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/23a5efc0475e8257bca7705e5eecdee68689be307e921144fade554265721519", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.5.3", "os": "mac", "version": "1.39.0", "date": "2026-10-26T07:41:24.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/81160af4048e76a37e536611e11d4d16751439deca7c2a6aff7f652e825341f5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.6.1", "os": "mac", "version": "1.39.0", "date": "2026-10-26T07:42:44.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/c4e8dca0415427fcc218b16eaf4b2977c559d8c326ef89060474aee75dbaba53", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.6.0", "os": "wasm", "version": "1.39.0", "date": "2026-10-26T07:04:00.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/af94ab2b7548ceabe33e19070bd8dea90456dbfe42a6959de865e86360e64ba2", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.7.0", "os": "win", "version": "1.39.0", "date": "2026-10-26T07:03:14.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/327aa1528be95fe31c482ee1e7855ce9c710d2f78f9060225ad368df51ba3e74", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.5.3", "os": "win", "version": "1.39.0", "date": "2026-10-26T07:03:17.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/31721809e3d30471f21b16ea15645637a62608edac571f24760077e51971c366", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" }, { "r": "4.6.1", "os": "win", "version": "1.39.0", "date": "2026-10-26T07:03:34.000Z", "commit": "f50380007207aa57a37773d17191e6fa5a5c48b9", "fileid": "https://r2.ropensci.org/9af2d9e58f48024c8eea1b429f94a485c9cc701f7bf32cbaad2a3f01b9dc05d0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/40282894298" } ] }