Package: CBN2Path 1.3.0
William Choi-Kim
CBN2Path: CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
Authors:
CBN2Path_1.3.0.tar.gz
CBN2Path_1.3.0.tgz(r-4.6-x86_64)CBN2Path_1.3.0.tgz(r-4.6-arm64)CBN2Path_1.3.0.tgz(r-4.5-x86_64)CBN2Path_1.3.0.tgz(r-4.5-arm64)
CBN2Path_1.3.0.tar.gz(r-4.7-arm64)CBN2Path_1.3.0.tar.gz(r-4.7-x86_64)CBN2Path_1.3.0.tar.gz(r-4.6-arm64)CBN2Path_1.3.0.tar.gz(r-4.6-x86_64)
CBN2Path_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CBN2Path/json (API)
| # Install 'CBN2Path' in R: |
| install.packages('CBN2Path', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rockwillck/cbn2path/issues
On BioConductor:CBN2Path-1.3.0(bioc 3.24)CBN2Path-1.2.0(bioc 3.23)
softwarestatisticalmethodgraphandnetworkbayesianpathwaysgsl
Last updated from:4253c00057. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 212 | ||
| linux-devel-arm64 | NOTE | 533 | ||
| linux-devel-x86_64 | NOTE | 572 | ||
| source / vignettes | OK | 563 | ||
| linux-release-arm64 | NOTE | 505 | ||
| linux-release-x86_64 | NOTE | 591 | ||
| macos-release-arm64 | WARNING | 499 | ||
| macos-release-x86_64 | WARNING | 666 | ||
| macos-oldrel-arm64 | WARNING | 378 | ||
| macos-oldrel-x86_64 | WARNING | 1114 | ||
| windows-devel | NOTE | 462 | ||
| windows-release | NOTE | 490 | ||
| windows-oldrel | NOTE | 390 | ||
| wasm-release | OK | 165 |
Exports:base2Indexingbase2IndVecbcbnctcbnctcbnSingleedgeMarginalizedgenerateDatagenerateMatrixGenotypesgenerateTCGAMatrixgenotypeFeasibilitygenotypeMatrixMutatorgetExamplesgetRawTCGADatahcbnhcbnSinglejensenShannonDivergencepathEdgeMapperpathNormalizationpathProbCBNpathProbQuartetBCBNpathProbQuartetCTCBNpathProbQuartetHCBNpathProbQuartetRCBNpathProbSSWMpathwayCompatibilityQuartetpathwayFeasibilitypathwayGenotypeCompatibilitypathwayWeightingRCBNpermutationsposetWeightingRCBNpredictabilityreadLambdareadPatternreadPosetreadTimeSpocktransitiveClosurevisualizeCBNModelvisualizeFitnessLandscapevisualizeProbabilities
Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbiomaRtBiostringsbitbit64blobcachemclicliprcodacodetoolscowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdownloaderdplyrevaluatefarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtablehighrhmshttrhttr2igraphIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppArmadilloreadrrlangRSQLitervestS4ArraysS4VectorsS7scalesselectrSeqinfosnowSparseArraystringistringrSummarizedExperimentsyssystemfontsTCGAbiolinksTCGAbiolinksGUI.datatibbletidygraphtidyrtidyselecttweenrtzdbutf8vctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryaml
