Package: CAMERA 1.61.0
CAMERA: Collection of annotation related methods for mass spectrometry data
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Authors:
CAMERA_1.61.0.tar.gz
CAMERA_1.61.0.zip(r-4.5)CAMERA_1.61.0.zip(r-4.4)CAMERA_1.61.0.zip(r-4.3)
CAMERA_1.61.0.tgz(r-4.4-arm64)CAMERA_1.61.0.tgz(r-4.4-x86_64)CAMERA_1.61.0.tgz(r-4.3-arm64)CAMERA_1.61.0.tgz(r-4.3-x86_64)
CAMERA_1.61.0.tar.gz(r-4.5-noble)CAMERA_1.61.0.tar.gz(r-4.4-noble)
CAMERA_1.61.0.tgz(r-4.4-emscripten)CAMERA_1.61.0.tgz(r-4.3-emscripten)
CAMERA.pdf |CAMERA.html✨
CAMERA/json (API)
NEWS
# Install 'CAMERA' in R: |
install.packages('CAMERA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sneumann/camera/issues
- mm14 - Extract of marker mixture 14 LC/MS data
On BioConductor:CAMERA-1.61.0(bioc 3.20)CAMERA-1.60.0(bioc 3.19)
Last updated 2 months agofrom:499f547ae0
Exports:annotateannotateDiffreportcalcCaScalcCiScalcIsotopescalcPCcalcPC.hcscalcPC.lpccleanParallelcombinexsAnnoscompoundLibrariescompoundQuantilesfindAdductsfindIsotopesfindIsotopesWithValidationfindKendrickMassesfindNeutralLossfindNeutralLossSpecsgenerateRulesgetAllPeakEICsgetAtomCountgetIsotopeClustergetIsotopeProportiongetPeaklistgetpspectragetReducedPeaklistgroupCorrgroupDengroupFWHMmassWindowSizesplotEICsplotPsSpectrumpspec2metfragpspec2metfusionreadListssetDefaultListssetDefaultParamssetParamsshowxsAnnotate
Dependencies:abindaffyaffyioAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocParallelbslibcachemcheckmatecliclueclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIDelayedArraydigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegraphgridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMassSpecWaveletMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmgcvmimeMsCoreUtilsMsExperimentMsFeaturesMSnbaseMultiAssayExperimentmunsellmzIDmzRncdf4nlmennetopensslpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchpurrrQFeaturesR6rappdirsRBGLRColorBrewerRcppreshape2Rhdf5librlangrmarkdownrpartrstudioapiS4ArraysS4VectorssassscalessnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitevsnwithrxcmsxfunXMLXVectoryamlzlibbioc
Atom count expectations with compoundQuantiles
Rendered fromcompoundQuantilesVignette.Rnw
usingutils::Sweave
on Jul 01 2024.Last update: 2019-12-02
Started: 2016-09-23
Isotope pattern validation with CAMERA
Rendered fromIsotopeDetectionVignette.Rnw
usingutils::Sweave
on Jul 01 2024.Last update: 2022-02-08
Started: 2016-09-28
Molecule Identification with CAMERA
Rendered fromCAMERA.Rnw
usingutils::Sweave
on Jul 01 2024.Last update: 2022-02-08
Started: 2013-11-01