Package: CAMERA 1.63.0
CAMERA: Collection of annotation related methods for mass spectrometry data
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Authors:
CAMERA_1.63.0.tar.gz
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CAMERA.pdf |CAMERA.html✨
CAMERA/json (API)
NEWS
# Install 'CAMERA' in R: |
install.packages('CAMERA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sneumann/camera/issues
- mm14 - Extract of marker mixture 14 LC/MS data
On BioConductor:CAMERA-1.63.0(bioc 3.21)CAMERA-1.62.0(bioc 3.20)
immunooncologymassspectrometrymetabolomics
Last updated 5 months agofrom:1d980b7ec5. Checks:1 OK, 5 WARNING, 3 ERROR, 2 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 28 2025 |
R-4.5-win-x86_64 | WARNING | Feb 28 2025 |
R-4.5-mac-x86_64 | ERROR | Feb 28 2025 |
R-4.5-mac-aarch64 | WARNING | Feb 28 2025 |
R-4.5-linux-x86_64 | WARNING | Feb 28 2025 |
R-4.4-win-x86_64 | WARNING | Feb 28 2025 |
R-4.4-mac-x86_64 | ERROR | Feb 28 2025 |
R-4.4-mac-aarch64 | WARNING | Feb 28 2025 |
R-4.3-win-x86_64 | NOTE | Feb 28 2025 |
R-4.3-mac-x86_64 | ERROR | Feb 28 2025 |
R-4.3-mac-aarch64 | NOTE | Feb 28 2025 |
Exports:annotateannotateDiffreportcalcCaScalcCiScalcIsotopescalcPCcalcPC.hcscalcPC.lpccleanParallelcombinexsAnnoscompoundLibrariescompoundQuantilesfindAdductsfindIsotopesfindIsotopesWithValidationfindKendrickMassesfindNeutralLossfindNeutralLossSpecsgenerateRulesgetAllPeakEICsgetAtomCountgetIsotopeClustergetIsotopeProportiongetPeaklistgetpspectragetReducedPeaklistgroupCorrgroupDengroupFWHMmassWindowSizesplotEICsplotPsSpectrumpspec2metfragpspec2metfusionreadListssetDefaultListssetDefaultParamssetParamsshowxsAnnotate
Dependencies:abindaffyaffyioAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocParallelbslibcachemcheckmatecliclueclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIDelayedArraydigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegraphgridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMassSpecWaveletMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmgcvmimeMsCoreUtilsMsExperimentMsFeaturesMSnbaseMultiAssayExperimentmunsellmzIDmzRncdf4nlmennetopensslpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchpurrrQFeaturesR6rappdirsRBGLRColorBrewerRcppreshape2Rhdf5librlangrmarkdownrpartrstudioapiS4ArraysS4VectorssassscalessnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitevsnwithrxcmsxfunXMLXVectoryaml
Atom count expectations with compoundQuantiles
Rendered fromcompoundQuantilesVignette.Rnw
usingutils::Sweave
on Feb 28 2025.Last update: 2019-12-02
Started: 2016-09-23
Isotope pattern validation with CAMERA
Rendered fromIsotopeDetectionVignette.Rnw
usingutils::Sweave
on Feb 28 2025.Last update: 2022-02-08
Started: 2016-09-28
Molecule Identification with CAMERA
Rendered fromCAMERA.Rnw
usingutils::Sweave
on Feb 28 2025.Last update: 2022-02-08
Started: 2013-11-01