NEWS
CAMERA 1.59.1
BUG FIXES
- Add multtest to dependencies to fix testing on daily build
CAMERA 1.51.1
USER VISIBLE CHANGES
- Move to mzML for example data and vignette following the removal of mzData support in mzR
CAMERA 1.47.1
BUG FIXES
- Thanks to Lain (INRAe) and Team W4M for this PR, fixing argument passing
to annotatedDiffreport()
CAMERA 1.45.2
BUG FIXES
- Thanks to Sebastien Hutinet @shutinet for fixing the adduct mass of CF3COOH.
Includes a corresponding change in unit tests. Closes #61
CAMERA 1.43.2
BUG FIXES
- Change several && causing failure
with _R_CHECK_LENGTH_1_CONDITION_ and _R_CHECK_LENGTH_1_CONDITION_
CAMERA 1.43.1
BUG FIXES
- Improve vignette layout and fix typos, thanks to Anton Nikolas Waniek
CAMERA 1.41.1
NEW FEATURES
- allow findAdducts alternative intval (thanks to Sunil Dhakad)
CAMERA 1.39.2
BUG FIXES
- Fix duplicate vignette name
CAMERA 1.33.3
BUG FIXES
- Fix getPeaklist not pulling rownames correctly, closing #22, thanks to Jan Stanstrup
CAMERA 1.33.2
BUG FIXES
- Fix getPeaklist, updated getReducedPeaklist(), Thanks to Kristian Peters
CAMERA 1.33.1
NEW FEATURES
- allow matchedfilter alternative intval in getPeaklist (J. Stanstrup)
- pass intval from Groupcorr to calcCaS (J. Stanstrup)
- getReducedPeaklist returns just one intensity per pspec (K. Peters)
CAMERA 1.29.2
BUG FIXES
- Fix build issues and Vignette encoding (again)
- Fix build issues and Vignette encoding
CAMERA 1.29.1
NEW FEATURES
- Added function findIsotopesWithValidation
CAMERA 1.27.2
BUG FIXES
- Fix imports in DESCRIPTION to avoid igraph overwriting xcms::group()
CAMERA 1.25.3
BUG FIXES
- Disabled Rmpi support and usage in the unit tests,
which lead to timeouts on BioC build farm
- Fix parallel processing with SNOW
CAMERA 1.25.2
USER VISIBLE CHANGES
- Disabled Rmpi support and usage on Windows
CAMERA 1.25.1
BUG FIXES
- Fix the import of the igraph methods, because it also exported a groups function. Solves the error "Error in x$membership : $ operator not defined for this S4 class"
CAMERA 1.23.2
BUG FIXES
- Fix bug in generateRules() if no ions matching the polarity are provided explicitly
CAMERA 1.23.1
BUG FIXES
- Fix bug in generateRules() with empty neutraladditions
CAMERA 1.20.1
NEW FEATURES
- Added possibility to pass cor_exp_th from annotateDiffreport to groupCorr()
CAMERA 1.20.0
SIGNIFICANT USER-VISIBLE CHANGES
- Version bump for BioC release
CAMERA 1.19.1
BUG FIXES
- Fixed bug in the generateRules function, where in the negative mode
rules with polycharged positve ions are not created
CAMERA 1.15.5
SIGNIFICANT USER-VISIBLE CHANGES
- MPI Version of findAdducts() should now consume a lot less memory then before
CAMERA 1.15.4
NEW FEATURES
- findKendrickMass() now allows negative retention time windows,
essentially allowing homologous series of losses
CAMERA 1.15.1
BUG FIXES
- Fix in findIsotopes, where sometime peak with huge m/z differences where annotated as isotopes
CAMERA 1.13.9
SIGNIFICANT USER-VISIBLE CHANGES
- findNeutralLossSpecs and findNeutral now accepts multiple masses and use correctly the ppm error
BUG FIXES
- Memory fix in groupCorr if all peaks are contained in one group.
CAMERA 1.13.8
SIGNIFICANT USER-VISIBLE CHANGES
- Add igraph package to the dependencies
BUG FIXES
- Fix for groupCorr with graphMethod="lpc", with a igraph library > 0.6
CAMERA 1.13.7
BUG FIXES
- Fixed problem in findIsotopes with a previous grouped single sample xcmsSet
CAMERA 1.13.6
BUG FIXES
- Fixed problem in findAdducts where higher nM+x annotations were erroneous deleted
- Fixed problem in combinexsAnnos, which produces a "subscript out of bounds " error
CAMERA 1.13.5
BUG FIXES
- Fixed problem "Error in data.frame(...)" in findAdducts when using polarity = negative