Package: CAGEWorkflow 1.29.0

Malte Thodberg

CAGEWorkflow: A step-by-step guide to analyzing CAGE data using R/Bioconductor

Workflow for analyzing Cap Analysis of Gene Expression (CAGE) data using R/Bioconductor.

Authors:Malte Thodberg [aut, cre]

CAGEWorkflow_1.29.0.tar.gz
CAGEWorkflow_1.29.0.zip(r-4.7-any)CAGEWorkflow_1.29.0.zip(r-4.6-any)CAGEWorkflow_1.29.0.zip(r-4.5-any)
CAGEWorkflow_1.29.0.tgz(r-4.6-any)CAGEWorkflow_1.29.0.tgz(r-4.5-any)
CAGEWorkflow_1.29.0.tar.gz(r-4.7-any)CAGEWorkflow_1.29.0.tar.gz(r-4.6-any)
CAGEWorkflow_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CAGEWorkflow/json (API)

# Install 'CAGEWorkflow' in R:
install.packages('CAGEWorkflow', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:CAGEWorkflow-1.29.0(workflows 3.24)CAGEWorkflow-1.28.0(workflows 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressionworkflowannotationworkflow

2.30 score 0 exports 151 dependencies

Last updated from:dcacfde7dc. Checks:8 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING322
linux-develWARNING491
source / vignettesERROR533
linux-releaseWARNING422
macos-releaseWARNING192
macos-oldrelWARNING230
windows-develWARNING228
windows-releaseWARNING227
windows-oldrelWARNING211
wasm-releaseOK245

Exports:

Dependencies:abindAnnotationDbiAnnotationFilteraskpassassertthatbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemCAGEfightRcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluatefarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicFilesGenomicInteractionsGenomicRangesggplot2gluegridExtragtableGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2igraphInteractionSetinterpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclelobstrmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimenanotubesnnetopensslpillarpkgconfigpngprettyunitsprogressProtGenericspurrrR6rappdirsRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisLitewithrxfunXMLxml2XVectoryaml