Package: BumpyMatrix 1.15.0
Aaron Lun
BumpyMatrix: Bumpy Matrix of Non-Scalar Objects
Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.
Authors:
BumpyMatrix_1.15.0.tar.gz
BumpyMatrix_1.15.0.zip(r-4.5)BumpyMatrix_1.15.0.zip(r-4.4)BumpyMatrix_1.15.0.zip(r-4.3)
BumpyMatrix_1.15.0.tgz(r-4.4-any)BumpyMatrix_1.15.0.tgz(r-4.3-any)
BumpyMatrix_1.15.0.tar.gz(r-4.5-noble)BumpyMatrix_1.15.0.tar.gz(r-4.4-noble)
BumpyMatrix_1.15.0.tgz(r-4.4-emscripten)BumpyMatrix_1.15.0.tgz(r-4.3-emscripten)
BumpyMatrix.pdf |BumpyMatrix.html✨
BumpyMatrix/json (API)
| # Install 'BumpyMatrix' in R: |
| install.packages('BumpyMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/bumpymatrix/issues
On BioConductor:BumpyMatrix-1.15.0(bioc 3.21)BumpyMatrix-1.14.0(bioc 3.20)
softwareinfrastructuredatarepresentation
Last updated 1 months agofrom:e7f42608a9. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 03 2024 |
| R-4.5-win | NOTE | Dec 03 2024 |
| R-4.5-linux | NOTE | Dec 03 2024 |
| R-4.4-win | NOTE | Dec 03 2024 |
| R-4.4-mac | NOTE | Dec 03 2024 |
| R-4.3-win | NOTE | Dec 03 2024 |
| R-4.3-mac | NOTE | Dec 03 2024 |
Exports:BumpyMatrixcbindchartrcommonColnamescommonColnames<-corcovendsWithgrepgreplgsubIQRmadMathMath2meanmedianncharOpspmaxpmax.intpminpmin.intquantilerbindredimsdshowsplitAsBumpyMatrixstartsWithsubsubstrsubstringSummaryttolowertoupperundimunsplitAsDataFrameunstrsplitvarwhich.maxwhich.min
Dependencies:BiocGenericsgenericsIRangeslatticeMatrixS4Vectors
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The BumpyAtomicMatrix subclass | !,BumpyAtomicMatrix-method BumpyAtomicMatrix BumpyAtomicMatrix-class BumpyCharacterMatrix-class BumpyIntegerMatrix-class BumpyLogicalMatrix-class BumpyNumericMatrix-class chartr,ANY,ANY,BumpyCharacterMatrix-method cor,BumpyAtomicMatrix,BumpyAtomicMatrix-method cov,BumpyAtomicMatrix,BumpyAtomicMatrix-method endsWith,BumpyCharacterMatrix-method grep,ANY,BumpyCharacterMatrix-method grepl,ANY,BumpyCharacterMatrix-method gsub,ANY,ANY,BumpyCharacterMatrix-method IQR,BumpyAtomicMatrix-method mad,BumpyAtomicMatrix-method Math,BumpyAtomicMatrix-method Math2,BumpyAtomicMatrix-method mean,BumpyAtomicMatrix-method median,BumpyAtomicMatrix-method nchar,BumpyCharacterMatrix-method Ops,atomic,BumpyAtomicMatrix-method Ops,BumpyAtomicMatrix,atomic-method Ops,BumpyAtomicMatrix,BumpyAtomicMatrix-method Ops,BumpyAtomicMatrix,matrix-method Ops,BumpyAtomicMatrix,missing-method Ops,matrix,BumpyAtomicMatrix-method pmax,BumpyAtomicMatrix-method pmax.int,BumpyAtomicMatrix-method pmin,BumpyAtomicMatrix-method pmin.int,BumpyAtomicMatrix-method quantile,BumpyAtomicMatrix-method range,BumpyAtomicMatrix-method sd,BumpyAtomicMatrix-method show,BumpyAtomicMatrix-method startsWith,BumpyCharacterMatrix-method sub,ANY,ANY,BumpyCharacterMatrix-method substr,BumpyCharacterMatrix-method substring,BumpyCharacterMatrix-method Summary,BumpyAtomicMatrix-method tolower,BumpyCharacterMatrix-method toupper,BumpyCharacterMatrix-method unstrsplit,BumpyCharacterMatrix-method var,BumpyAtomicMatrix,BumpyAtomicMatrix-method var,BumpyAtomicMatrix,missing-method which.max,BumpyAtomicMatrix-method which.min,BumpyAtomicMatrix-method |
| The BumpyDataFrameMatrix class | BumpyDataFrameMatrix BumpyDataFrameMatrix-class commonColnames,BumpyDataFrameMatrix-method commonColnames<-,BumpyDataFrameMatrix-method show,BumpyDataFrameMatrix-method [,BumpyDataFrameMatrix,ANY,ANY,ANY-method [,BumpyDataFrameMatrix,ANY-method [,BumpyDataFrameMatrix,BumpyMatrix,ANY,ANY-method [,BumpyDataFrameMatrix,BumpyMatrix-method [<-,BumpyDataFrameMatrix,ANY,ANY,BumpyMatrix-method |
| The BumpyMatrix class | BumpyMatrix BumpyMatrix-class cbind,BumpyMatrix-method dim,BumpyMatrix-method dimnames,BumpyMatrix-method dimnames<-,BumpyMatrix,ANY-method length,BumpyMatrix-method lengths,BumpyMatrix-method rbind,BumpyMatrix-method redim redim,CompressedList,BumpyMatrix-method show,BumpyMatrix-method t,BumpyMatrix-method undim undim,BumpyMatrix-method unlist,BumpyMatrix-method [,BumpyMatrix,ANY,ANY,ANY-method [,BumpyMatrix,ANY-method [,BumpyMatrix,BumpyMatrix,ANY,ANY-method [,BumpyMatrix,BumpyMatrix-method [<-,BumpyMatrix,ANY,ANY,BumpyMatrix-method [<-,BumpyMatrix,ANY,ANY,CompressedList-method |
| Split to a BumpyMatrix | splitAsBumpyMatrix |
| Unsplit a BumpyMatrix | unsplitAsDataFrame |
