Overview | Construction | Basic operations | Advanced subsetting | Additional operations | Session information
Package: BumpyMatrix 1.21.0
Aaron Lun
BumpyMatrix: Bumpy Matrix of Non-Scalar Objects
Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.
Authors:
BumpyMatrix_1.21.0.tar.gz
BumpyMatrix_1.21.0.zip(r-4.7)BumpyMatrix_1.21.0.zip(r-4.6)BumpyMatrix_1.21.0.zip(r-4.5)
BumpyMatrix_1.21.0.tgz(r-4.6-any)BumpyMatrix_1.21.0.tgz(r-4.5-any)
BumpyMatrix_1.21.0.tar.gz(r-4.7-any)BumpyMatrix_1.21.0.tar.gz(r-4.6-any)
BumpyMatrix_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BumpyMatrix/json (API)
| # Install 'BumpyMatrix' in R: |
| install.packages('BumpyMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/bumpymatrix/issues
On BioConductor:BumpyMatrix-1.21.0(bioc 3.24)BumpyMatrix-1.20.0(bioc 3.23)
softwareinfrastructuredatarepresentation
Last updated from:1cf5fe284c. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 272 | ||
| linux-devel-x86_64 | NOTE | 259 | ||
| source / vignettes | OK | 215 | ||
| linux-release-x86_64 | NOTE | 218 | ||
| macos-release-arm64 | NOTE | 177 | ||
| macos-oldrel-arm64 | NOTE | 118 | ||
| windows-devel | NOTE | 138 | ||
| windows-release | NOTE | 126 | ||
| windows-oldrel | NOTE | 134 | ||
| wasm-release | OK | 100 |
Exports:BumpyMatrixcbindchartrcommonColnamescommonColnames<-corcovendsWithgrepgreplgsubIQRmadMathMath2meanmedianncharOpspmaxpmax.intpminpmin.intquantilerbindredimsdshowsplitAsBumpyMatrixstartsWithsubsubstrsubstringSummaryttolowertoupperundimunsplitAsDataFrameunstrsplitvarwhich.maxwhich.min
Dependencies:BiocGenericsgenericsIRangeslatticeMatrixS4Vectors
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The BumpyAtomicMatrix subclass | !,BumpyAtomicMatrix-method BumpyAtomicMatrix BumpyAtomicMatrix-class BumpyCharacterMatrix-class BumpyIntegerMatrix-class BumpyLogicalMatrix-class BumpyNumericMatrix-class chartr,ANY,ANY,BumpyCharacterMatrix-method cor,BumpyAtomicMatrix,BumpyAtomicMatrix-method cov,BumpyAtomicMatrix,BumpyAtomicMatrix-method endsWith,BumpyCharacterMatrix-method grep,ANY,BumpyCharacterMatrix-method grepl,ANY,BumpyCharacterMatrix-method gsub,ANY,ANY,BumpyCharacterMatrix-method IQR,BumpyAtomicMatrix-method mad,BumpyAtomicMatrix-method Math,BumpyAtomicMatrix-method Math2,BumpyAtomicMatrix-method mean,BumpyAtomicMatrix-method median,BumpyAtomicMatrix-method nchar,BumpyCharacterMatrix-method Ops,atomic,BumpyAtomicMatrix-method Ops,BumpyAtomicMatrix,atomic-method Ops,BumpyAtomicMatrix,BumpyAtomicMatrix-method Ops,BumpyAtomicMatrix,matrix-method Ops,BumpyAtomicMatrix,missing-method Ops,matrix,BumpyAtomicMatrix-method pmax,BumpyAtomicMatrix-method pmax.int,BumpyAtomicMatrix-method pmin,BumpyAtomicMatrix-method pmin.int,BumpyAtomicMatrix-method quantile,BumpyAtomicMatrix-method range,BumpyAtomicMatrix-method sd,BumpyAtomicMatrix-method show,BumpyAtomicMatrix-method startsWith,BumpyCharacterMatrix-method sub,ANY,ANY,BumpyCharacterMatrix-method substr,BumpyCharacterMatrix-method substring,BumpyCharacterMatrix-method Summary,BumpyAtomicMatrix-method tolower,BumpyCharacterMatrix-method toupper,BumpyCharacterMatrix-method unstrsplit,BumpyCharacterMatrix-method var,BumpyAtomicMatrix,BumpyAtomicMatrix-method var,BumpyAtomicMatrix,missing-method which.max,BumpyAtomicMatrix-method which.min,BumpyAtomicMatrix-method |
| The BumpyDataFrameMatrix class | BumpyDataFrameMatrix BumpyDataFrameMatrix-class commonColnames,BumpyDataFrameMatrix-method commonColnames<-,BumpyDataFrameMatrix-method show,BumpyDataFrameMatrix-method [,BumpyDataFrameMatrix,ANY,ANY,ANY-method [,BumpyDataFrameMatrix,ANY-method [,BumpyDataFrameMatrix,BumpyMatrix,ANY,ANY-method [,BumpyDataFrameMatrix,BumpyMatrix-method [<-,BumpyDataFrameMatrix,ANY,ANY,BumpyMatrix-method |
| The BumpyMatrix class | BumpyMatrix BumpyMatrix-class cbind,BumpyMatrix-method dim,BumpyMatrix-method dimnames,BumpyMatrix-method dimnames<-,BumpyMatrix,ANY-method length,BumpyMatrix-method lengths,BumpyMatrix-method rbind,BumpyMatrix-method redim redim,CompressedList,BumpyMatrix-method show,BumpyMatrix-method t,BumpyMatrix-method undim undim,BumpyMatrix-method unlist,BumpyMatrix-method [,BumpyMatrix,ANY,ANY,ANY-method [,BumpyMatrix,ANY-method [,BumpyMatrix,BumpyMatrix,ANY,ANY-method [,BumpyMatrix,BumpyMatrix-method [<-,BumpyMatrix,ANY,ANY,BumpyMatrix-method [<-,BumpyMatrix,ANY,ANY,CompressedList-method |
| Split to a BumpyMatrix | splitAsBumpyMatrix |
| Unsplit a BumpyMatrix | unsplitAsDataFrame |
