Package: BufferedMatrix 1.77.0

Ben Bolstad

BufferedMatrix: A matrix data storage object held in temporary files

A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.

Authors:Ben Bolstad <[email protected]>

BufferedMatrix_1.77.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
BufferedMatrix/json (API)

# Install 'BufferedMatrix' in R:
install.packages('BufferedMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bmbolstad/bufferedmatrix/issues

On BioConductor:BufferedMatrix-1.77.0(bioc 3.24)BufferedMatrix-1.76.0(bioc 3.23)

infrastructure

4.60 score 1 packages 11 scripts 396 downloads 1 mentions 53 exports 0 dependencies

Last updated from:2d99771d6b. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR127
linux-devel-arm64NOTE106
linux-devel-x86_64NOTE123
source / vignettesOK147
linux-release-arm64NOTE126
linux-release-x86_64NOTE116
macos-release-arm64WARNING93
macos-release-x86_64WARNING196
macos-oldrel-arm64WARNING91
macos-oldrel-x86_64WARNING275
windows-develNOTE86
windows-releaseNOTE79
windows-oldrelNOTE88
wasm-releaseOK82

Exports:AddColumnas.BufferedMatrixas.matrixbuffer.dimcolApplycolMaxcolMeanscolMedianscolMinColModecolnamescolnames<-colRangescolSdcolSumscolVarscreateBufferedMatrixdirectorydisk.usageduplicateewApplyfilenamesis.BufferedMatrixis.ColModeis.ReadOnlyModeis.RowModeMaxmeanmemory.usageMinMoveStorageDirectoryncolnrowpowprefixReadOnlyModerowApplyrowMaxrowMeansrowMediansrowMinRowModerownamesrownames<-rowSdrowSumsrowVarsSdset.buffer.dimshowsubBufferedMatrixSumVar

Dependencies:

BufferedMatrix: Introduction

Rendered fromBufferedMatrix.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Check or Coerce object to BufferedMatrixas.BufferedMatrix is.BufferedMatrix
Class BufferedMatrixAddColumn AddColumn,BufferedMatrix-method as.matrix,BufferedMatrix-method buffer.dim buffer.dim,BufferedMatrix-method BufferedMatrix-class coerce,BufferedMatrix,matrix-method coerce,matrix,BufferedMatrix-method colApply colApply,BufferedMatrix-method colMax colMax,BufferedMatrix-method colMeans colMeans,BufferedMatrix-method colMedians colMedians,BufferedMatrix-method colMin colMin,BufferedMatrix-method ColMode ColMode,BufferedMatrix-method colnames,BufferedMatrix-method colnames<-,BufferedMatrix-method colRanges colRanges,BufferedMatrix-method colSd colSd,BufferedMatrix-method colSums colSums,BufferedMatrix-method colVars colVars,BufferedMatrix-method dim,BufferedMatrix-method dimnames,BufferedMatrix-method dimnames<-,BufferedMatrix-method directory directory,BufferedMatrix-method disk.usage disk.usage,BufferedMatrix-method duplicate duplicate,BufferedMatrix-method ewApply ewApply,BufferedMatrix-method exp,BufferedMatrix-method filenames filenames,BufferedMatrix-method is.ColMode is.ColMode,BufferedMatrix-method is.ReadOnlyMode is.ReadOnlyMode,BufferedMatrix-method is.RowMode is.RowMode,BufferedMatrix-method log,BufferedMatrix-method Max Max,BufferedMatrix-method mean,BufferedMatrix-method memory.usage memory.usage,BufferedMatrix-method Min Min,BufferedMatrix-method MoveStorageDirectory MoveStorageDirectory,BufferedMatrix-method ncol,BufferedMatrix-method nrow,BufferedMatrix-method pow pow,BufferedMatrix-method prefix prefix,BufferedMatrix-method ReadOnlyMode ReadOnlyMode,BufferedMatrix-method rowApply rowApply,BufferedMatrix-method rowMax rowMax,BufferedMatrix-method rowMeans rowMeans,BufferedMatrix-method rowMedians rowMedians,BufferedMatrix-method rowMin rowMin,BufferedMatrix-method RowMode RowMode,BufferedMatrix-method rownames,BufferedMatrix-method rownames<-,BufferedMatrix-method rowSd rowSd,BufferedMatrix-method rowSums rowSums,BufferedMatrix-method rowVars rowVars,BufferedMatrix-method Sd Sd,BufferedMatrix-method set.buffer.dim set.buffer.dim,BufferedMatrix-method show,BufferedMatrix-method sqrt,BufferedMatrix-method subBufferedMatrix subBufferedMatrix,BufferedMatrix-method Sum Sum,BufferedMatrix-method Var Var,BufferedMatrix-method [,BufferedMatrix-method [<-,BufferedMatrix-method
createBufferedMatrixcreateBufferedMatrix