Package: BufferedMatrix 1.77.0

Ben Bolstad

BufferedMatrix: A matrix data storage object held in temporary files

A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.

# Install 'BufferedMatrix' in R:

install.packages('BufferedMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bmbolstad/bufferedmatrix/issues

On BioConductor:BufferedMatrix-1.77.0(bioc 3.24)BufferedMatrix-1.76.0(bioc 3.23)

infrastructure

4.56 score 1 packages 6 scripts 1 mentions 53 exports 0 dependencies

Last updated from:2d99771d6b. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	142
linux-devel-arm64	NOTE	167
linux-devel-x86_64	NOTE	136
source / vignettes	OK	231
linux-release-arm64	NOTE	158
linux-release-x86_64	NOTE	173
macos-release-arm64	WARNING	97
macos-release-x86_64	WARNING	171
macos-oldrel-arm64	WARNING	90
macos-oldrel-x86_64	WARNING	201
windows-devel	NOTE	112
windows-release	NOTE	109
windows-oldrel	NOTE	108
wasm-release	OK	88

Exports:AddColumn as.BufferedMatrix as.matrix buffer.dim colApply colMax colMeans colMedians colMin ColMode colnames colnames<-colRanges colSd colSums colVars createBufferedMatrix directory disk.usage duplicate ewApply filenames is.BufferedMatrix is.ColMode is.ReadOnlyMode is.RowMode Max mean memory.usage Min MoveStorageDirectory ncol nrow pow prefix ReadOnlyMode rowApply rowMax rowMeans rowMedians rowMin RowMode rownames rownames<-rowSd rowSums rowVars Sd set.buffer.dim show subBufferedMatrix Sum Var

Dependencies:

BufferedMatrix: Introduction

Introduction | What is a BufferedMatrix? | Accessing and Manipulating data stored within a BufferedMatrix | Functions for summarizing a BufferedMatrix | Applying your own function to the rows or columns of a BufferedMatrix | Elementwise transformation of BufferedMatrix objects | Converting between BufferedMatrix and Matrix objects | BufferedMatrix objects are pass-by reference | Future Enhancements

Rendered fromBufferedMatrix.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check or Coerce object to BufferedMatrix	as.BufferedMatrix is.BufferedMatrix
Class BufferedMatrix	AddColumn AddColumn,BufferedMatrix-method as.matrix,BufferedMatrix-method buffer.dim buffer.dim,BufferedMatrix-method BufferedMatrix-class coerce,BufferedMatrix,matrix-method coerce,matrix,BufferedMatrix-method colApply colApply,BufferedMatrix-method colMax colMax,BufferedMatrix-method colMeans colMeans,BufferedMatrix-method colMedians colMedians,BufferedMatrix-method colMin colMin,BufferedMatrix-method ColMode ColMode,BufferedMatrix-method colnames,BufferedMatrix-method colnames<-,BufferedMatrix-method colRanges colRanges,BufferedMatrix-method colSd colSd,BufferedMatrix-method colSums colSums,BufferedMatrix-method colVars colVars,BufferedMatrix-method dim,BufferedMatrix-method dimnames,BufferedMatrix-method dimnames<-,BufferedMatrix-method directory directory,BufferedMatrix-method disk.usage disk.usage,BufferedMatrix-method duplicate duplicate,BufferedMatrix-method ewApply ewApply,BufferedMatrix-method exp,BufferedMatrix-method filenames filenames,BufferedMatrix-method is.ColMode is.ColMode,BufferedMatrix-method is.ReadOnlyMode is.ReadOnlyMode,BufferedMatrix-method is.RowMode is.RowMode,BufferedMatrix-method log,BufferedMatrix-method Max Max,BufferedMatrix-method mean,BufferedMatrix-method memory.usage memory.usage,BufferedMatrix-method Min Min,BufferedMatrix-method MoveStorageDirectory MoveStorageDirectory,BufferedMatrix-method ncol,BufferedMatrix-method nrow,BufferedMatrix-method pow pow,BufferedMatrix-method prefix prefix,BufferedMatrix-method ReadOnlyMode ReadOnlyMode,BufferedMatrix-method rowApply rowApply,BufferedMatrix-method rowMax rowMax,BufferedMatrix-method rowMeans rowMeans,BufferedMatrix-method rowMedians rowMedians,BufferedMatrix-method rowMin rowMin,BufferedMatrix-method RowMode RowMode,BufferedMatrix-method rownames,BufferedMatrix-method rownames<-,BufferedMatrix-method rowSd rowSd,BufferedMatrix-method rowSums rowSums,BufferedMatrix-method rowVars rowVars,BufferedMatrix-method Sd Sd,BufferedMatrix-method set.buffer.dim set.buffer.dim,BufferedMatrix-method show,BufferedMatrix-method sqrt,BufferedMatrix-method subBufferedMatrix subBufferedMatrix,BufferedMatrix-method Sum Sum,BufferedMatrix-method Var Var,BufferedMatrix-method [,BufferedMatrix-method [<-,BufferedMatrix-method
createBufferedMatrix	createBufferedMatrix