Prerequisites | Getting started | Use with R markdown v1 | Document header | Author affiliations | Abstract and running headers | Style macros | Code chunks | Figures | Simple figures | Figure captions | Alternative figure sizes | Accessibility considerations | Tables | Equations | Cross-references | Margin notes | Bibliography | References | Session info
Package: BiocStyle 2.41.0
Bioconductor Package Maintainer
BiocStyle: Standard styles for vignettes and other Bioconductor documents
Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.
Authors:
BiocStyle_2.41.0.tar.gz
BiocStyle_2.41.0.zip(r-4.7)BiocStyle_2.41.0.zip(r-4.6)BiocStyle_2.41.0.zip(r-4.5)
BiocStyle_2.41.0.tgz(r-4.6-any)BiocStyle_2.41.0.tgz(r-4.5-any)
BiocStyle_2.41.0.tar.gz(r-4.7-any)BiocStyle_2.41.0.tar.gz(r-4.6-any)
BiocStyle_2.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BiocStyle/json (API)
| # Install 'BiocStyle' in R: |
| install.packages('BiocStyle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/biocstyle/issues
On BioConductor:BiocStyle-2.41.0(bioc 3.24)BiocStyle-2.40.0(bioc 3.23)
softwarebioconductor-packagecore-package
Last updated from:04201e5d96. Checks:8 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 136 | ||
| linux-devel-x86_64 | ERROR | 165 | ||
| source / vignettes | OK | 190 | ||
| linux-release-x86_64 | ERROR | 189 | ||
| macos-release-arm64 | ERROR | 94 | ||
| macos-oldrel-arm64 | ERROR | 106 | ||
| windows-devel | ERROR | 78 | ||
| windows-release | ERROR | 91 | ||
| windows-oldrel | ERROR | 85 | ||
| wasm-release | OK | 101 |
Exports:BiocannopkgBiocbookBiocexptpkgBiocpkgCRANpkgdoc_dateGithubpkghtml_documentlatexmarkdownmd_documentoutputpdf_documentpkg_verRpackageuse_vignette_htmluse_vignette_pdf
Dependencies:base64encBiocManagerbookdownbslibcachemclidigestevaluatefastmapfontawesomefshighrhtmltoolsjquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsrlangrmarkdownsasstinytexxfunyaml
Authoring R Markdown vignettes
Last update: 2023-04-13
Started: 2016-12-02
Bioconductor LaTeX Style 2.0
1 Authoring package vignettes | 2 Structuring the document | A Session info | B Attached LaTeX packages | C Known issues
Last update: 2018-01-16
Started: 2016-04-26
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Defunct functions in package 'BiocStyle' | BiocStyle-defunct |
| Specify Rmarkdown document metadata | doc_date helpers pkg_ver |
| Use Bioconductor style to format R Markdown HTML output | html_document |
| Use Bioconductor style to format LaTeX vignettes | latex |
| Link to packages on Bioconductor, CRAN and GitHub | Biocannopkg Biocbook Biocexptpkg Biocpkg CRANpkg Githubpkg macros Rpackage |
| Use Bioconductor CSS style to format HTML vignettes | markdown |
| Convert to a BiocStyle markdown document | md_document |
| Output format of an R Markdown document | output |
| Use Bioconductor style to format R Markdown PDF output | pdf_document |
| Create 'Rmd' vignette templates for HTML or PDF output | use_vignette_html use_vignette_pdf |
