Package: BiocSklearn 1.29.0

Vince Carey

BiocSklearn: interface to python sklearn via Rstudio reticulate

This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.

Authors:Vince Carey [cre, aut]

BiocSklearn_1.29.0.tar.gz
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BiocSklearn.pdf |BiocSklearn.html✨
BiocSklearn/json (API)
NEWS

# Install 'BiocSklearn' in R:
install.packages('BiocSklearn', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:BiocSklearn-1.29.0(bioc 3.21)BiocSklearn-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethoddimensionreductioninfrastructure

4.44 score 11 scripts 273 downloads 12 exports 41 dependencies

Last updated 3 months agofrom:8c69d92d52. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 08 2025
R-4.5-winOKJan 08 2025
R-4.5-linuxOKJan 08 2025
R-4.4-winOKJan 08 2025
R-4.4-macOKJan 08 2025
R-4.3-winOKJan 08 2025
R-4.3-macOKJan 08 2025

Exports:getTransformedh5matH5matrefSkDecompskIncrPartialPCAskIncrPCAskIncrPCA_h5skIncrPPCAskKMeansskPartialPCA_stepskPCAskPWD

Dependencies:abindaskpassbasiliskbasilisk.utilsBiobaseBiocGenericscrayoncurlDelayedArraydir.expiryfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesherehttrIRangesjsonlitelatticeMatrixMatrixGenericsmatrixStatsmimeopensslpngR6rappdirsRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilswithrXVector

BiocSklearn -- exposing python Scikit machine learning elements for Bioconductor

Vincent J. Carey, stvjc at channing.harvard.edu, Shweta Gopaulakrishnan, reshg at channing.harvard.edu, Samuela Pollack, spollack at jimmy.harvard.edu

Rendered fromBiocSklearn.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-01-27
Started: 2017-07-27