Package: BiocCheck 1.41.3

Marcel Ramos

BiocCheck: Bioconductor-specific package checks

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Authors:Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre], Leonardo Collado-Torres [ctb], Federico Marini [ctb]

BiocCheck_1.41.3.tar.gz
BiocCheck_1.41.3.zip(r-4.5)BiocCheck_1.41.3.zip(r-4.4)BiocCheck_1.41.3.zip(r-4.3)
BiocCheck_1.41.3.tgz(r-4.4-any)BiocCheck_1.41.3.tgz(r-4.3-any)
BiocCheck_1.41.3.tar.gz(r-4.5-noble)BiocCheck_1.41.3.tar.gz(r-4.4-noble)
BiocCheck_1.41.3.tgz(r-4.4-emscripten)BiocCheck_1.41.3.tgz(r-4.3-emscripten)
BiocCheck.pdf |BiocCheck.html✨
BiocCheck/json (API)
NEWS

# Install 'BiocCheck' in R:

install.packages('BiocCheck', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/bioccheck/issues

On BioConductor:BiocCheck-1.41.2(bioc 3.20)BiocCheck-1.40.0(bioc 3.19)

bioconductor-package

3 exports 3.11 score 67 dependencies 5 dependents

Last updated 15 days agofrom:3b599277a1

Exports:.BiocCheck BiocCheck BiocCheckGitClone

Dependencies:askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager biocViews bit bit64 bitops blob cachem callr cli codetools cpp11 curl DBI dbplyr dplyr evaluate fansi fastmap filelock generics glue graph highr httr httr2 jsonlite knitr lifecycle magrittr memoise mime openssl pillar pkgconfig plogr processx ps purrr R6 rappdirs RBGL RCurl rlang RSQLite RUnit rvest selectr stringdist stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr xfun XML xml2 yaml

BiocCheck: Ensuring Bioconductor package guidelines

Rendered fromBiocCheck.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-04-17
Started: 2014-01-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check a package's adherence with the Bioconductor Package Guidelines	BiocCheck
A list of methods for the BiocCheck reference class	add,BiocCheck-method BiocCheck-methods
Checks specific to a Git clone of a package repository	BiocCheckGitClone
Report context of events to user with a data.frame of events and locations	Context
A lower level Message helper class for BiocCheck	Message-class
A list of methods for the Message reference class	getCondition,Message-method Message-methods setCondition,Message-method setMessage,Message-method