Package: BiocCheck 1.43.2

Marcel Ramos

BiocCheck: Bioconductor-specific package checks

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Authors:Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre], Leonardo Collado-Torres [ctb], Federico Marini [ctb]

BiocCheck_1.43.2.tar.gz
BiocCheck_1.43.2.zip(r-4.5)BiocCheck_1.43.2.zip(r-4.4)
BiocCheck_1.43.2.tgz(r-4.4-any)
BiocCheck_1.43.2.tar.gz(r-4.5-noble)BiocCheck_1.43.2.tar.gz(r-4.4-noble)
BiocCheck_1.43.2.tgz(r-4.4-emscripten)
BiocCheck.pdf |BiocCheck.html✨
BiocCheck/json (API)
NEWS

# Install 'BiocCheck' in R:

install.packages('BiocCheck', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/bioccheck/issues

On BioConductor:BiocCheck-1.43.2(bioc 3.21)BiocCheck-1.42.1(bioc 3.20)

infrastructure bioconductor-package core-services

10.11 score 8 stars 6 packages 114 scripts 3.7k downloads 4 exports 67 dependencies

Last updated 2 months agofrom:1aed7d0e5c. Checks:1 OK, 4 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 08 2025
R-4.5-win	NOTE	Jan 08 2025
R-4.5-linux	NOTE	Jan 08 2025
R-4.4-win	NOTE	Jan 08 2025
R-4.4-mac	NOTE	Jan 08 2025

Exports:.BiocCheck .BiocPackage BiocCheck BiocCheckGitClone

Dependencies:askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager biocViews bit bit64 bitops blob cachem callr cli codetools cpp11 curl DBI dbplyr dplyr evaluate fansi fastmap filelock generics glue graph highr httr httr2 jsonlite knitr lifecycle magrittr memoise mime openssl pillar pkgconfig plogr processx ps purrr R6 rappdirs RBGL RCurl rlang RSQLite RUnit rvest selectr stringdist stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr xfun XML xml2 yaml

BiocCheck: Ensuring Bioconductor package guidelines

Rendered fromBiocCheck.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-11-01
Started: 2014-01-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check a package's adherence with the Bioconductor Package Guidelines	BiocCheck
A list of methods for the BiocCheck reference class	add,BiocCheck-method BiocCheck-methods
Checks specific to a Git clone of a package repository	BiocCheckGitClone
Report context of events to user with a data.frame of events and locations	Context
A lower level Message helper class for BiocCheck	Message-class
A list of methods for the Message reference class	getCondition,Message-method Message-methods setCondition,Message-method setMessage,Message-method