Package: BiocBaseUtils 1.15.1

Marcel Ramos

BiocBaseUtils: Utility and internal functions for Bioconductor packages

The package coalesces typical helper functions that are scattered throughout the Bioconductor ecosystem. It aims to reduce code redundancy by formalizing functions often used by Bioconductor developers. These functions include operations such as replacing slots in an object, selecting observations for show methods, labeling function life cycles, and more.

Authors:Marcel Ramos [aut, cre], Martin Morgan [ctb], Hervé Pagès [ctb]

BiocBaseUtils_1.15.1.tar.gz
BiocBaseUtils_1.15.1.zip(r-4.7)BiocBaseUtils_1.15.1.zip(r-4.6)BiocBaseUtils_1.15.1.zip(r-4.5)
BiocBaseUtils_1.15.1.tgz(r-4.6-any)BiocBaseUtils_1.15.1.tgz(r-4.5-any)
BiocBaseUtils_1.15.1.tar.gz(r-4.7-any)BiocBaseUtils_1.15.1.tar.gz(r-4.6-any)
BiocBaseUtils_1.15.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BiocBaseUtils/json (API)
NEWS

# Install 'BiocBaseUtils' in R:
install.packages('BiocBaseUtils', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/biocbaseutils/issues

On BioConductor:BiocBaseUtils-1.15.1(bioc 3.24)BiocBaseUtils-1.14.2(bioc 3.23)

softwareinfrastructurebioconductor-packagecore-package

9.38 score 4 stars 713 packages 7 scripts 11k downloads 12 exports 0 dependencies

Last updated from:481d51b6ba. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE132
linux-devel-x86_64OK165
source / vignettesOK180
linux-release-x86_64OK143
macos-release-arm64OK97
macos-oldrel-arm64OK97
windows-develOK72
windows-releaseOK70
windows-oldrelOK70
wasm-releaseOK90

Exports:askUserYesNocheckInstalledisCharacterisScalarCharacterisScalarIntegerisScalarLogicalisScalarNumberisTRUEorFALSEisZeroOneCharacterlifeCycleselectSomesetSlots

Dependencies:

BiocBaseUtils Quick Start

Bioconductor Core Team

Rendered fromBiocBaseUtils.Rmdusingknitr::rmarkdownon Jun 07 2026.

Last update: 2026-05-08
Started: 2022-08-18

Readme and manuals

Help Manual

Help pageTopics
Ask user for a yes/no responseaskUserYesNo
Suite of helper functions to test for typesAssertions isCharacter isScalarCharacter isScalarInteger isScalarLogical isScalarNumber isTRUEorFALSE isZeroOneCharacter
Check packages are installed otherwise suggestcheckInstalled
Set the life cycle stage of a functionlifeCycle
Select and return only some entries from a vectorselectSome
Convenience function to set slot valuesreplaceSlots setSlots