{
  "_id": "6a4c9b0807c3fd5c3260e51c",
  "Package": "BiocBaseUtils",
  "Title": "Utility and internal functions for Bioconductor packages",
  "Version": "1.15.1",
  "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Martin\", \"Morgan\", , \"martin.morgan@roswellpark.org\", \"ctb\"\n),\nperson(\"Hervé\", \"Pagès\", , \"hpages.on.github@gmail.com\", \"ctb\")\n)",
  "Description": "The package coalesces typical helper functions that are\nscattered throughout the Bioconductor ecosystem. It aims to\nreduce code redundancy by formalizing functions often used by\nBioconductor developers. These functions include operations\nsuch as replacing slots in an object, selecting observations\nfor show methods, labeling function life cycles, and more.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "biocViews": "Software, Infrastructure",
  "BugReports": "https://www.github.com/Bioconductor/BiocBaseUtils/issues",
  "URL": "https://www.github.com/Bioconductor/BiocBaseUtils",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Date": "2026-05-08",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-08 19:02:27 UTC",
  "RemoteUrl": "https://github.com/bioc/BiocBaseUtils",
  "RemoteRef": "HEAD",
  "RemoteSha": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-07 06:17:54 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nMartin Morgan [ctb],\nHervé Pagès [ctb]",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "BiocBaseUtils_1.15.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/a4e9d89abf1de489e6463002bb56cb5915658f7c26d2f099d5add21d4e733b29",
  "_filesize": 115747,
  "_sha256": "a4e9d89abf1de489e6463002bb56cb5915658f7c26d2f099d5add21d4e733b29",
  "_expires": "2026-10-15T06:21:58.000Z",
  "_created": "2026-07-07T06:17:54.000Z",
  "_published": "2026-07-07T06:22:00.210Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 4
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232",
  "_status": "success",
  "_upstream": "https://github.com/bioc/BiocBaseUtils",
  "_commit": {
    "id": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
    "author": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "committer": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "message": "version bump 1.15.1\n",
    "time": 1778266947
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85549535665,
      "time": 152,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8129566993"
    },
    {
      "job": 85549535721,
      "time": 210,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8129583024"
    },
    {
      "job": 85549535690,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8129562879"
    },
    {
      "job": 85549535662,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8129549664"
    },
    {
      "job": 85549535684,
      "time": 90,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8129549947"
    },
    {
      "job": 85549096041,
      "time": 188,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8129524852"
    },
    {
      "job": 85549535674,
      "time": 88,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8129550311"
    },
    {
      "job": 85549535735,
      "time": 76,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8129546626"
    },
    {
      "job": 85549535720,
      "time": 68,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8129544184"
    },
    {
      "job": 85549535682,
      "time": 65,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8129543641"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 737,
  "_updates": [
    {
      "week": "2025-28",
      "n": 4
    },
    {
      "week": "2025-29",
      "n": 2
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-19",
      "n": 10
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.15.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.14.2",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "bioconductor-package",
    "core-package"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 23,
      "uuid": 4392950
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 13986,
    "source": "https://www.bioconductor.org/packages/stats/bioc/BiocBaseUtils"
  },
  "_devurl": "https://github.com/bioconductor/biocbaseutils",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BiocBaseUtils.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/biocbaseutils",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "askUserYesNo",
    "checkInstalled",
    "isCharacter",
    "isScalarCharacter",
    "isScalarInteger",
    "isScalarLogical",
    "isScalarNumber",
    "isTRUEorFALSE",
    "isZeroOneCharacter",
    "lifeCycle",
    "selectSome",
    "setSlots"
  ],
  "_help": [
    {
      "page": "askUserYesNo",
      "title": "Ask user for a yes/no response",
      "topics": [
        "askUserYesNo"
      ]
    },
    {
      "page": "Assertions",
      "title": "Suite of helper functions to test for types",
      "topics": [
        "Assertions",
        "isCharacter",
        "isScalarCharacter",
        "isScalarInteger",
        "isScalarLogical",
        "isScalarNumber",
        "isTRUEorFALSE",
        "isZeroOneCharacter"
      ]
    },
    {
      "page": "checkInstalled",
      "title": "Check packages are installed otherwise suggest",
      "topics": [
        "checkInstalled"
      ]
    },
    {
      "page": "lifeCycle",
      "title": "Set the life cycle stage of a function",
      "topics": [
        "lifeCycle"
      ]
    },
    {
      "page": "selectSome",
      "title": "Select and return only some entries from a vector",
      "topics": [
        "selectSome"
      ]
    },
    {
      "page": "setSlots",
      "title": "Convenience function to set slot values",
      "topics": [
        "replaceSlots",
        "setSlots"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/BiocBaseUtils/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "BiocBaseUtils.Rmd",
      "filename": "BiocBaseUtils.html",
      "title": "BiocBaseUtils Quick Start",
      "author": "Bioconductor Core Team",
      "engine": "knitr::rmarkdown",
      "headings": [
        "BiocBaseUtils",
        "Installation",
        "Load Package",
        "Assertions",
        "Logical",
        "Character",
        "Numeric",
        "Slot replacement",
        "show method",
        "Contributing",
        "Session Info"
      ],
      "created": "2022-08-18 19:25:58",
      "modified": "2026-05-08 19:02:27",
      "commits": 3
    }
  ],
  "_score": 9.490282266482936,
  "_indexed": true,
  "_nocasepkg": "biocbaseutils",
  "_universes": [
    "bioc",
    "link-ny",
    "bioconductor"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.1",
      "date": "2026-07-07T06:21:31.000Z",
      "distro": "resolute",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/a22f062e0dddb7361565e6ef1ad9077a38c70c3012880649176311edeeb38d92",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.15.1",
      "date": "2026-07-07T06:20:16.000Z",
      "distro": "resolute",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/c69bb1a2ec9e511cf033a70b147a6ce88e0415a2d1cf93c3091aee5afebe3aaa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:30.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/97c7d65876695b3ed1b7b7e4c1245ad590c27b189ec58aaab81f8425b41b4f0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:28.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/8308738b0ad9e8a2a7af02859f3fcaa6b0b3abeea336d59cda413ed1243a640a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:41.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/1e6e5264d7cb29104eaad32b3b042325f81066cf74fd852b82bc7d3a182eb5ae",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:09.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/c4e5d6c346121715be9aa62abbdbfdf551cd2733a96e2b53d36b3ac91662d44c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:03.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/64fcf80555e45ed564374fd01ae38489e2801dc97ae1aba12d4abdc929c7551b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.15.1",
      "date": "2026-07-07T06:19:01.000Z",
      "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48",
      "fileid": "https://r2.ropensci.org/d9ef9dd259094203b82f2cb5f0a0b47b18bf363f3f8cf2555eaebb532d48c754",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28845719232"
    }
  ]
}