{ "_id": "6ac36ad5d743750d376dbafe", "Package": "BiocBaseUtils", "Title": "Utility and internal functions for Bioconductor packages", "Version": "1.15.1", "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Martin\", \"Morgan\", , \"martin.morgan@roswellpark.org\", \"ctb\"\n),\nperson(\"Hervé\", \"Pagès\", , \"hpages.on.github@gmail.com\", \"ctb\")\n)", "Description": "The package coalesces typical helper functions that are\nscattered throughout the Bioconductor ecosystem. It aims to\nreduce code redundancy by formalizing functions often used by\nBioconductor developers. These functions include operations\nsuch as replacing slots in an object, selecting observations\nfor show methods, labeling function life cycles, and more.", "License": "Artistic-2.0", "Encoding": "UTF-8", "biocViews": "Software, Infrastructure", "BugReports": "https://www.github.com/Bioconductor/BiocBaseUtils/issues", "URL": "https://www.github.com/Bioconductor/BiocBaseUtils", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Date": "2026-05-08", "Config/roxygen2/version": "8.0.0", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-08 19:02:27 UTC", "RemoteUrl": "https://github.com/bioc/BiocBaseUtils", "RemoteRef": "HEAD", "RemoteSha": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-05 09:12:33 UTC", "User": "root" }, "Author": "Marcel Ramos [aut, cre] (ORCID:\n),\nMartin Morgan [ctb],\nHervé Pagès [ctb]", "Maintainer": "Marcel Ramos ", "_user": "bioc", "_type": "src", "_file": "BiocBaseUtils_1.15.1.tar.gz", "_fileid": "https://r2.ropensci.org/ee589cf9eddd42d695f35a33d9080cc3ee5c8f27c8b1645397e0f6fafcea3230", "_filesize": 112835, "_sha256": "ee589cf9eddd42d695f35a33d9080cc3ee5c8f27c8b1645397e0f6fafcea3230", "_expires": "2027-01-13T09:16:03.000Z", "_created": "2026-10-05T09:12:33.000Z", "_published": "2026-10-05T09:16:05.861Z", "_bioccheck": { "error": 0, "warning": 0, "note": 4 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499", "_status": "success", "_upstream": "https://github.com/bioc/BiocBaseUtils", "_commit": { "id": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "author": "LiNk-NY ", "committer": "LiNk-NY ", "message": "version bump 1.15.1\n", "time": 1778266947 }, "_maintainer": { "name": "Marcel Ramos", "email": "marcel.ramos@sph.cuny.edu", "login": "link-ny", "bluesky": "@mramos148.bsky.social", "linkedin": "in/mramos148", "orcid": "0000-0002-3242-0582", "twitter": "@M2RuseR", "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member / \nR 📦 dev ", "uuid": 4392950 }, "_distro": "resolute", "_jobs": [ { "job": 111693246395, "time": 170, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11335995636" }, { "job": 111693246601, "time": 143, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11335287507" }, { "job": 111693246456, "time": 136, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11335048281" }, { "job": 111693246565, "time": 96, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11335342260" }, { "job": 111693246654, "time": 82, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11335172714" }, { "job": 111692257497, "time": 163, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11335740336" }, { "job": 111693246470, "time": 77, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11335217599" }, { "job": 111693246548, "time": 64, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11334969016" }, { "job": 111693246578, "time": 65, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11334658901" }, { "job": 111693246619, "time": 59, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11335237433" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1274, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-19", "n": 10 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.15.1", "bioc": "3.24" }, { "branch": "release", "version": "1.14.2", "bioc": "3.23" } ], "_topics": [ "software", "infrastructure", "bioconductor-package", "core-package" ], "_stars": 4, "_contributors": [ { "user": "link-ny", "count": 23, "uuid": 4392950 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 471, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 21677, "source": "https://www.bioconductor.org/packages/stats/bioc/BiocBaseUtils" }, "_devurl": "https://github.com/bioconductor/biocbaseutils", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/BiocBaseUtils.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/bioconductor/biocbaseutils", "_realowner": "bioc", "_cranurl": false, "_exports": [ "askUserYesNo", "checkInstalled", "isCharacter", "isScalarCharacter", "isScalarInteger", "isScalarLogical", "isScalarNumber", "isTRUEorFALSE", "isZeroOneCharacter", "lifeCycle", "selectSome", "setSlots" ], "_help": [ { "page": "askUserYesNo", "title": "Ask user for a yes/no response", "topics": [ "askUserYesNo" ] }, { "page": "Assertions", "title": "Suite of helper functions to test for types", "topics": [ "Assertions", "isCharacter", "isScalarCharacter", "isScalarInteger", "isScalarLogical", "isScalarNumber", "isTRUEorFALSE", "isZeroOneCharacter" ] }, { "page": "checkInstalled", "title": "Check packages are installed otherwise suggest", "topics": [ "checkInstalled" ] }, { "page": "lifeCycle", "title": "Set the life cycle stage of a function", "topics": [ "lifeCycle" ] }, { "page": "selectSome", "title": "Select and return only some entries from a vector", "topics": [ "selectSome" ] }, { "page": "setSlots", "title": "Convenience function to set slot values", "topics": [ "replaceSlots", "setSlots" ] } ], "_readme": "https://github.com/bioc/BiocBaseUtils/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "BiocBaseUtils.Rmd", "filename": "BiocBaseUtils.html", "title": "BiocBaseUtils Quick Start", "author": "Bioconductor Core Team", "engine": "knitr::rmarkdown", "headings": [ "BiocBaseUtils", "Installation", "Load Package", "Assertions", "Logical", "Character", "Numeric", "Slot replacement", "show method", "Contributing", "Session Info" ], "created": "2022-08-18 19:25:58", "modified": "2026-05-08 19:02:27", "commits": 3 } ], "_score": 9.737833795868994, "_indexed": true, "_nocasepkg": "biocbaseutils", "_universes": [ "bioc", "link-ny", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.15.1", "date": "2026-10-05T09:15:02.000Z", "distro": "resolute", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/e15e1e74fbf8d045b56228530ccac74709090adaf1b5ac7e7135bf727a7c4483", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.6.1", "os": "linux", "version": "1.15.1", "date": "2026-10-05T09:14:59.000Z", "distro": "resolute", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/4fe8fe250c0b261ccebfb07ba8d159db4239d2e470077e1eb98ebb692beb5047", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.5.3", "os": "mac", "version": "1.15.1", "date": "2026-10-05T09:14:24.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/cbefd8882db723a8bcb8202809f4feba86e2733695a32a6fad5b3198a044d53e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.6.1", "os": "mac", "version": "1.15.1", "date": "2026-10-05T09:14:05.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/5c3be5a8426e75edb85690552e77cea369c4650805bce5463b3beca67ac8dded", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.6.0", "os": "wasm", "version": "1.15.1", "date": "2026-10-05T09:14:12.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/a7422019aa9a8846b959e2b20f9503fa3cec0a98c1bf130644f0e008373c9334", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.7.0", "os": "win", "version": "1.15.1", "date": "2026-10-05T09:13:38.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/47a64411d0267bb36b63429ce4534367f26648c89bb231b552cbf71382fa723d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.5.3", "os": "win", "version": "1.15.1", "date": "2026-10-05T09:13:41.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/2392d99566806b32fd24c30c29579b57e862592252845a02634f11fdd72bc2b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" }, { "r": "4.6.1", "os": "win", "version": "1.15.1", "date": "2026-10-05T09:13:36.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "https://r2.ropensci.org/b79e4b95820f361f7295fb6bde13990071bd0469fe0a2108d4a3d9d8e74e8cee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37288210499" } ] }