{ "_id": "6a250cb34b233be1983881bd", "Package": "BiocBaseUtils", "Title": "Utility and internal functions for Bioconductor packages", "Version": "1.15.1", "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Martin\", \"Morgan\", , \"martin.morgan@roswellpark.org\", \"ctb\"\n),\nperson(\"Hervé\", \"Pagès\", , \"hpages.on.github@gmail.com\", \"ctb\")\n)", "Description": "The package coalesces typical helper functions that are\nscattered throughout the Bioconductor ecosystem. It aims to\nreduce code redundancy by formalizing functions often used by\nBioconductor developers. These functions include operations\nsuch as replacing slots in an object, selecting observations\nfor show methods, labeling function life cycles, and more.", "License": "Artistic-2.0", "Encoding": "UTF-8", "biocViews": "Software, Infrastructure", "BugReports": "https://www.github.com/Bioconductor/BiocBaseUtils/issues", "URL": "https://www.github.com/Bioconductor/BiocBaseUtils", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Date": "2026-05-08", "Config/roxygen2/version": "8.0.0", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-08 19:02:27 UTC", "RemoteUrl": "https://github.com/bioc/BiocBaseUtils", "RemoteRef": "HEAD", "RemoteSha": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-07 06:13:02 UTC", "User": "root" }, "Author": "Marcel Ramos [aut, cre] (ORCID:\n),\nMartin Morgan [ctb],\nHervé Pagès [ctb]", "Maintainer": "Marcel Ramos ", "MD5sum": "46e4fc8ae122511023aad6727cfb58ff", "_user": "bioc", "_type": "src", "_file": "BiocBaseUtils_1.15.1.tar.gz", "_fileid": "6dbb23b51184dc408ac1ce9671f80ed92264858b1a853a86fc3587fbddafbe1f", "_filesize": 112125, "_sha256": "6dbb23b51184dc408ac1ce9671f80ed92264858b1a853a86fc3587fbddafbe1f", "_created": "2026-06-07T06:13:02.000Z", "_published": "2026-06-07T06:16:18.985Z", "_jobs": [ { "job": 79936595815, "time": 132, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7461360175" }, { "job": 79936595827, "time": 165, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7461364261" }, { "job": 79936595824, "time": 143, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7461361373" }, { "job": 79936595831, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7461355888" }, { "job": 79936595829, "time": 97, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7461356204" }, { "job": 79936417984, "time": 180, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7461344424" }, { "job": 79936595842, "time": 90, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7461355365" }, { "job": 79936595825, "time": 72, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7461353102" }, { "job": 79936595818, "time": 70, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7461353015" }, { "job": 79936595817, "time": 70, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7461353076" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/BiocBaseUtils", "_commit": { "id": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "author": "LiNk-NY ", "committer": "LiNk-NY ", "message": "version bump 1.15.1\n", "time": 1778266947 }, "_maintainer": { "name": "Marcel Ramos", "email": "marcel.ramos@sph.cuny.edu", "login": "link-ny", "bluesky": "@mramos148.bsky.social", "linkedin": "in/mramos148", "orcid": "0000-0002-3242-0582", "twitter": "@M2RuseR", "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member / \nR 📦 dev ", "uuid": 4392950 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 713, "_updates": [ { "week": "2025-28", "n": 4 }, { "week": "2025-29", "n": 2 }, { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-19", "n": 10 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.15.1", "bioc": "3.24" }, { "branch": "release", "version": "1.14.2", "bioc": "3.23" } ], "_topics": [ "software", "infrastructure", "bioconductor-package", "core-package" ], "_stars": 4, "_contributors": [ { "user": "link-ny", "count": 23, "uuid": 4392950 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 11292, "source": "https://www.bioconductor.org/packages/stats/bioc/BiocBaseUtils" }, "_devurl": "https://github.com/bioconductor/biocbaseutils", "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/BiocBaseUtils.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/biocbaseutils", "_realowner": "bioc", "_cranurl": false, "_exports": [ "askUserYesNo", "checkInstalled", "isCharacter", "isScalarCharacter", "isScalarInteger", "isScalarLogical", "isScalarNumber", "isTRUEorFALSE", "isZeroOneCharacter", "lifeCycle", "selectSome", "setSlots" ], "_help": [ { "page": "askUserYesNo", "title": "Ask user for a yes/no response", "topics": [ "askUserYesNo" ] }, { "page": "Assertions", "title": "Suite of helper functions to test for types", "topics": [ "Assertions", "isCharacter", "isScalarCharacter", "isScalarInteger", "isScalarLogical", "isScalarNumber", "isTRUEorFALSE", "isZeroOneCharacter" ] }, { "page": "checkInstalled", "title": "Check packages are installed otherwise suggest", "topics": [ "checkInstalled" ] }, { "page": "lifeCycle", "title": "Set the life cycle stage of a function", "topics": [ "lifeCycle" ] }, { "page": "selectSome", "title": "Select and return only some entries from a vector", "topics": [ "selectSome" ] }, { "page": "setSlots", "title": "Convenience function to set slot values", "topics": [ "replaceSlots", "setSlots" ] } ], "_readme": "https://github.com/bioc/BiocBaseUtils/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "BiocBaseUtils.Rmd", "filename": "BiocBaseUtils.html", "title": "BiocBaseUtils Quick Start", "author": "Bioconductor Core Team", "engine": "knitr::rmarkdown", "headings": [ "BiocBaseUtils", "Installation", "Load Package", "Assertions", "Logical", "Character", "Numeric", "Slot replacement", "show method", "Contributing", "Session Info" ], "created": "2022-08-18 19:25:58", "modified": "2026-05-08 19:02:27", "commits": 3 } ], "_score": 9.38298165404641, "_indexed": true, "_nocasepkg": "biocbaseutils", "_universes": [ "bioc", "link-ny", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.15.1", "date": "2026-06-07T06:15:50.000Z", "distro": "noble", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "a0b01d5ef99391335707a767d8bd975283cb06664fb62b85f0bc3eb94ab0ba3a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.6.0", "os": "linux", "version": "1.15.1", "date": "2026-06-07T06:15:29.000Z", "distro": "noble", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "bb29c5b79281ca072580b0a5cf535b09202583cc038c5b87ac546c9feafe7f8f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.5.3", "os": "mac", "version": "1.15.1", "date": "2026-06-07T06:14:42.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "3adff1ead5c56905eb4da631d8a72f84b7e65c10f77c630bdec210c2c8395adc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.6.0", "os": "mac", "version": "1.15.1", "date": "2026-06-07T06:14:47.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "0ac863e8ed58c517b36c44c628aed798408c871d6f3cc714b92925d937492253", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.6.0", "os": "wasm", "version": "1.15.1", "date": "2026-06-07T06:14:48.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "a272435df7bc5330c1b188b2c78010886a44ee059ce89826bd5171ef25394252", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.7.0", "os": "win", "version": "1.15.1", "date": "2026-06-07T06:14:15.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "363b02c9984f21eccb20fec82a8a430e2fa6e170423c6d94f0f83684e78fffb4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.5.3", "os": "win", "version": "1.15.1", "date": "2026-06-07T06:14:15.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "9b12597376d3509a75d0f25cf3f4b43a91e3ee9382a106d22292e81e76b73096", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" }, { "r": "4.6.0", "os": "win", "version": "1.15.1", "date": "2026-06-07T06:14:14.000Z", "commit": "481d51b6ba2e70318654e785b2b4ba84e43ddf48", "fileid": "1678e3bc4968309cd88f9103b4ed4365a799a21c07b630a37433460afe326ae2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/27084584890" } ] }