Package: BioTIP 1.27.0

[Standard Workflow](#Standard workflow) | [Data Preprocessing](#Data Preprocessing) | [Pre-selection Transcript](#Pre-selection Transcript) | [Network Partition](#Network Partition) | [Identifying putative Critical Transition Signals (CTS) using the DNB Module](#Identifying putative Critical Transition Signals (CTS) using the DNB Module) | [Finding Tipping Point and Evaluating CTS](#Finding Tipping Point and Evaluating CTS) | [Advanced Estimation for Pearson Correlation Coefficient Matrix](#Advanced Estimation for Pearson Correlation Coefficient Matrix) | [Data Preprocessing with Trajectory Building Tools](#Data Preprocessing with Trajectory Building Tools) | [Predicting Tipping Point (Advanced Index of Critical Transition (IC*))](#Predicting Tipping Point (Advanced Index of Critical Transition (IC*))) | [Gene Pre-selection](#Gene Pre-selection) | [Network Partition](#Network Partition2) | [Inferring Tipping Point-Driven Transcription Factors](#Inferring Tipping Point-Driven Transcription Factors) | [Quick Start](#Quick Start) | [Genomic Data Source](#Genomic Data Source) | [Extracting Summary Data](#Extracting Summary Data) | [Loading Data](#Loading Data) | [Prepare GRanges Object](#Prepare GRanges Object) | An Identification of Critical Tipping Point using Bulk RNA-seq### | Applying to scRNA-seq Data | Transcript Annotation and Biotype | loading data from local drive | Processing Query | Classifying Biotypes | Extracting intron coordinates | Filtering coding transcripts | Finding overlapping transcripts