Package: BiFET 1.25.0
Ahrim Youn
BiFET: Bias-free Footprint Enrichment Test
BiFET identifies TFs whose footprints are over-represented in target regions compared to background regions after correcting for the bias arising from the imbalance in read counts and GC contents between the target and background regions. For a given TF k, BiFET tests the null hypothesis that the target regions have the same probability of having footprints for the TF k as the background regions while correcting for the read count and GC content bias. For this, we use the number of target regions with footprints for TF k, t_k as a test statistic and calculate the p-value as the probability of observing t_k or more target regions with footprints under the null hypothesis.
Authors:
BiFET_1.25.0.tar.gz
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BiFET.pdf |BiFET.html✨
BiFET/json (API)
NEWS
| # Install 'BiFET' in R: |
| install.packages('BiFET', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:BiFET-1.25.0(bioc 3.20)BiFET-1.24.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:0e5eca9229
Exports:calculate_enrich_p
Dependencies:askpassBiocGenericscurlGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslpoibinR6S4VectorssysUCSC.utilsXVectorzlibbioc
