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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BiFET" in publications use:'
type: software
license: GPL-3.0-only
title: 'BiFET: Bias-free Footprint Enrichment Test'
version: 1.25.0
abstract: BiFET identifies TFs whose footprints are over-represented in target regions
  compared to background regions after correcting for the bias arising from the imbalance
  in read counts and GC contents between the target and background regions. For a
  given TF k, BiFET tests the null hypothesis that the target regions have the same
  probability of having footprints for the TF k as the background regions while correcting
  for the read count and GC content bias. For this, we use the number of target regions
  with footprints for TF k, t_k as a test statistic and calculate the p-value as the
  probability of observing t_k or more target regions with footprints under the null
  hypothesis.
authors:
- family-names: Youn
  given-names: Ahrim
  email: Ahrim.Youn@jax.org
- family-names: Marquez
  given-names: Eladio
  email: Eladio.Marquez@jax.org
- family-names: Lawlor
  given-names: Nathan
  email: nathan.lawlor03@gmail.com
- family-names: Stitzel
  given-names: Michael
  email: Michael.Stitzel@jax.org
- family-names: Ucar
  given-names: Duygu
  email: Duygu.Ucar@jax.org
repository: https://bioc.r-universe.dev
date-released: '2021-11-20'
contact:
- family-names: Youn
  given-names: Ahrim
  email: Ahrim.Youn@jax.org