Package: BCRANK 1.69.0
Adam Ameur
BCRANK: Predicting binding site consensus from ranked DNA sequences
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Authors:
BCRANK_1.69.0.tar.gz
BCRANK_1.69.0.zip(r-4.5)BCRANK_1.69.0.zip(r-4.4)BCRANK_1.69.0.zip(r-4.3)
BCRANK_1.69.0.tgz(r-4.4-x86_64)BCRANK_1.69.0.tgz(r-4.4-arm64)BCRANK_1.69.0.tgz(r-4.3-x86_64)BCRANK_1.69.0.tgz(r-4.3-arm64)
BCRANK_1.69.0.tar.gz(r-4.5-noble)BCRANK_1.69.0.tar.gz(r-4.4-noble)
BCRANK_1.69.0.tgz(r-4.4-emscripten)BCRANK_1.69.0.tgz(r-4.3-emscripten)
BCRANK.pdf |BCRANK.html✨
BCRANK/json (API)
| # Install 'BCRANK' in R: |
| install.packages('BCRANK', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- BCRANKout - BCRANK results for USF1 ChIP-chip data
On BioConductor:BCRANK-1.69.0(bioc 3.21)BCRANK-1.68.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:537aaff0cd. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-win-x86_64 | NOTE | Dec 19 2024 |
| R-4.5-linux-x86_64 | NOTE | Dec 19 2024 |
| R-4.4-win-x86_64 | NOTE | Dec 19 2024 |
| R-4.4-mac-x86_64 | NOTE | Dec 19 2024 |
| R-4.4-mac-aarch64 | NOTE | Dec 19 2024 |
| R-4.3-win-x86_64 | NOTE | Dec 19 2024 |
| R-4.3-mac-x86_64 | NOTE | Dec 19 2024 |
| R-4.3-mac-aarch64 | NOTE | Dec 19 2024 |
Exports:bcrankbcrankScoreconsensusfnamematchingSitesmatchVectorplotpwmsearchPathshowtoptable
Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BCRANK: predicting binding site consensus from ranked DNA sequences | bcrank |
| Class "BCRANKmatch" | BCRANKmatch BCRANKmatch-class bcrankScore consensus matchVector |
| BCRANK results for USF1 ChIP-chip data | BCRANKout |
| Class "BCRANKresult" | BCRANKresult BCRANKresult-class fname toptable |
| Class "BCRANKsearch" | BCRANKsearch BCRANKsearch-class plot,BCRANKsearch,missing-method pwm searchPath |
| Report IUPAC consensus occurrences in a fasta file | matchingSites |