Package: BCRANK 1.75.0
Adam Ameur
BCRANK: Predicting binding site consensus from ranked DNA sequences
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Authors:
BCRANK_1.75.0.tar.gz
BCRANK_1.75.0.zip(r-4.7)BCRANK_1.75.0.zip(r-4.6)BCRANK_1.75.0.zip(r-4.5)
BCRANK_1.75.0.tgz(r-4.6-x86_64)BCRANK_1.75.0.tgz(r-4.6-arm64)BCRANK_1.75.0.tgz(r-4.5-x86_64)BCRANK_1.75.0.tgz(r-4.5-arm64)
BCRANK_1.75.0.tar.gz(r-4.7-arm64)BCRANK_1.75.0.tar.gz(r-4.7-x86_64)BCRANK_1.75.0.tar.gz(r-4.6-arm64)BCRANK_1.75.0.tar.gz(r-4.6-x86_64)
BCRANK_1.75.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BCRANK/json (API)
| # Install 'BCRANK' in R: |
| install.packages('BCRANK', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- BCRANKout - BCRANK results for USF1 ChIP-chip data
On BioConductor:BCRANK-1.75.0(bioc 3.24)BCRANK-1.74.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:85f24daaad. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 143 | ||
| linux-devel-arm64 | NOTE | 187 | ||
| linux-devel-x86_64 | NOTE | 209 | ||
| source / vignettes | OK | 200 | ||
| linux-release-arm64 | NOTE | 165 | ||
| linux-release-x86_64 | NOTE | 218 | ||
| macos-release-arm64 | NOTE | 114 | ||
| macos-release-x86_64 | NOTE | 223 | ||
| macos-oldrel-arm64 | NOTE | 101 | ||
| macos-oldrel-x86_64 | NOTE | 208 | ||
| windows-devel | NOTE | 122 | ||
| windows-release | NOTE | 121 | ||
| windows-oldrel | NOTE | 112 | ||
| wasm-release | OK | 110 |
Exports:bcrankbcrankScoreconsensusfnamematchingSitesmatchVectorplotpwmsearchPathshowtoptable
Dependencies:BiocGenericsBiostringscrayongenericsIRangesS4VectorsSeqinfoXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BCRANK: predicting binding site consensus from ranked DNA sequences | bcrank |
| Class "BCRANKmatch" | BCRANKmatch BCRANKmatch-class bcrankScore consensus matchVector |
| BCRANK results for USF1 ChIP-chip data | BCRANKout |
| Class "BCRANKresult" | BCRANKresult BCRANKresult-class fname toptable |
| Class "BCRANKsearch" | BCRANKsearch BCRANKsearch-class plot,BCRANKsearch,missing-method pwm searchPath |
| Report IUPAC consensus occurrences in a fasta file | matchingSites |