Package: BCRANK 1.67.0
Adam Ameur
BCRANK: Predicting binding site consensus from ranked DNA sequences
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Authors:
BCRANK_1.67.0.tar.gz
BCRANK_1.67.0.zip(r-4.5)BCRANK_1.67.0.zip(r-4.4)BCRANK_1.67.0.zip(r-4.3)
BCRANK_1.67.0.tgz(r-4.4-arm64)BCRANK_1.67.0.tgz(r-4.4-x86_64)BCRANK_1.67.0.tgz(r-4.3-arm64)BCRANK_1.67.0.tgz(r-4.3-x86_64)
BCRANK_1.67.0.tar.gz(r-4.5-noble)BCRANK_1.67.0.tar.gz(r-4.4-noble)
BCRANK_1.67.0.tgz(r-4.4-emscripten)BCRANK_1.67.0.tgz(r-4.3-emscripten)
BCRANK.pdf |BCRANK.html✨
BCRANK/json (API)
| # Install 'BCRANK' in R: |
| install.packages('BCRANK', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- BCRANKout - BCRANK results for USF1 ChIP-chip data
On BioConductor:BCRANK-1.67.0(bioc 3.20)BCRANK-1.66.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:29ea3957d1
Exports:bcrankbcrankScoreconsensusfnamematchingSitesmatchVectorplotpwmsearchPathshowtoptable
Dependencies:askpassBiocGenericsBiostringscrayoncurlGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BCRANK: predicting binding site consensus from ranked DNA sequences | bcrank |
| Class "BCRANKmatch" | BCRANKmatch BCRANKmatch-class bcrankScore consensus matchVector |
| BCRANK results for USF1 ChIP-chip data | BCRANKout |
| Class "BCRANKresult" | BCRANKresult BCRANKresult-class fname toptable |
| Class "BCRANKsearch" | BCRANKsearch BCRANKsearch-class plot,BCRANKsearch,missing-method pwm searchPath |
| Report IUPAC consensus occurrences in a fasta file | matchingSites |