{ "_id": "6a196b97acfb0bcc41dea0ad", "Package": "BCRANK", "Title": "Predicting binding site consensus from ranked DNA sequences", "Version": "1.75.0", "Date": "2010-08-25", "Author": "Adam Ameur ", "Description": "Functions and classes for de novo prediction of\ntranscription factor binding consensus by heuristic search", "Maintainer": "Adam Ameur ", "License": "GPL-2", "LazyLoad": "true", "Collate": "AllClasses.R AllGenerics.R methods-BCRANKmatch.R\nmethods-BCRANKsearch.R methods-BCRANKresult.R BCRANK.R", "biocViews": "MotifDiscovery, GeneRegulation", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:32:44 UTC", "RemoteUrl": "https://github.com/bioc/BCRANK", "RemoteRef": "HEAD", "RemoteSha": "85f24daaad6accf19d76f604364bc63a848da244", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-29 08:40:04 UTC", "User": "root" }, "MD5sum": "cd6c04633c40850b91a95c7cbeba1b7b", "_user": "bioc", "_type": "src", "_file": "BCRANK_1.75.0.tar.gz", "_fileid": "c625ae928178466fab6702af0d660dd30eec40aed4da2344478feef14d6c3290", "_filesize": 3037582, "_sha256": "c625ae928178466fab6702af0d660dd30eec40aed4da2344478feef14d6c3290", "_created": "2026-05-29T08:40:04.000Z", "_published": "2026-05-29T10:33:58.999Z", "_jobs": [ { "job": 78467303525, "time": 143, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7286678853" }, { "job": 78467303555, "time": 187, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7286694238" }, { "job": 78467303604, "time": 209, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7286698595" }, { "job": 78467303717, "time": 165, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7286685309" }, { "job": 78467303646, "time": 218, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7286701247" }, { "job": 78467303578, "time": 101, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7288665369" }, { "job": 78467303613, "time": 208, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7287481540" }, { "job": 78467303605, "time": 114, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7288656737" }, { "job": 78467303616, "time": 223, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7287499807" }, { "job": 78466817237, "time": 200, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7286635185" }, { "job": 78467303527, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7286670976" }, { "job": 78467303561, "time": 122, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7286672830" }, { "job": 78467303579, "time": 112, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7286668879" }, { "job": 78467303564, "time": 121, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7286671708" } ], "_bioccheck": { "error": 2, "warning": 4, "note": 17 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/BCRANK", "_commit": { "id": "85f24daaad6accf19d76f604364bc63a848da244", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379564 }, "_maintainer": { "name": "Adam Ameur", "email": "adam.ameur@genpat.uu.se" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "Biostrings", "role": "Imports" }, { "package": "seqLogo", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.75.0", "bioc": "3.24" }, { "branch": "release", "version": "1.74.0", "bioc": "3.23" } ], "_topics": [ "motifdiscovery", "generegulation" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 608, "source": "https://www.bioconductor.org/packages/stats/bioc/BCRANK" }, "_mentions": 6, "_searchresults": 35, "_rbuild": "4.6.0", "_assets": [ "extra/BCRANK.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "bcrank", "bcrankScore", "consensus", "fname", "matchingSites", "matchVector", "plot", "pwm", "searchPath", "show", "toptable" ], "_datasets": [ { "name": "BCRANKout", "title": "BCRANK results for USF1 ChIP-chip data", "object": "BCRANKout", "file": "BCRANKout.rda", "class": [ "BCRANKresult" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "bcrank", "title": "BCRANK: predicting binding site consensus from ranked DNA sequences", "topics": [ "bcrank" ] }, { "page": "BCRANKmatch-class", "title": "Class \"BCRANKmatch\"", "topics": [ "BCRANKmatch", "BCRANKmatch-class", "bcrankScore", "consensus", "matchVector" ] }, { "page": "BCRANKout", "title": "BCRANK results for USF1 ChIP-chip data", "topics": [ "BCRANKout" ] }, { "page": "BCRANKresult-class", "title": "Class \"BCRANKresult\"", "topics": [ "BCRANKresult", "BCRANKresult-class", "fname", "toptable" ] }, { "page": "BCRANKsearch-class", "title": "Class \"BCRANKsearch\"", "topics": [ "BCRANKsearch", "BCRANKsearch-class", "plot,BCRANKsearch,missing-method", "pwm", "searchPath" ] }, { "page": "matchingSites", "title": "Report IUPAC consensus occurrences in a fasta file", "topics": [ "matchingSites" ] } ], "_rundeps": [ "BiocGenerics", "Biostrings", "crayon", "generics", "IRanges", "S4Vectors", "Seqinfo", "XVector" ], "_vignettes": [ { "source": "BCRANK.Rnw", "filename": "BCRANK.pdf", "title": "BCRANK", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:03:02", "modified": "2013-11-01 20:03:02", "commits": 1 } ], "_score": 4.623249290397901, "_indexed": true, "_nocasepkg": "bcrank", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.75.0", "date": "2026-05-29T08:42:57.000Z", "distro": "noble", "arch": "aarch64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "cf14b2f629120f7e64e91bbe99721c0806db315fe026e6417ce861d3a0dd8667", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.7.0", "os": "linux", "version": "1.75.0", "date": "2026-05-29T08:43:04.000Z", "distro": "noble", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "a803bc59e2e8aa26de27c18ac18093ee8f591ce1d9931ddc7b024728363ef893", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "linux", "version": "1.75.0", "date": "2026-05-29T08:42:30.000Z", "distro": "noble", "arch": "aarch64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "e487e72a41d0a5debe8053b4caf748abf8de22cc49c440909c1f5135cf845421", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "linux", "version": "1.75.0", "date": "2026-05-29T08:43:14.000Z", "distro": "noble", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "bcf387936529e3271b57a8df43c73f9e01bae67fdfeb72da991f9e306f62ca29", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.5.3", "os": "mac", "version": "1.75.0", "date": "2026-05-29T10:33:04.000Z", "arch": "aarch64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "cbf226ebbdf3e3ee2baeb7026c132e4405b6cb10666a7e16b59c74e5b98da711", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.5.3", "os": "mac", "version": "1.75.0", "date": "2026-05-29T09:25:46.000Z", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "b7d0e56ce7732b3a40acf375eeb2ad8034cea47c084933e932d97e78f165c17b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "mac", "version": "1.75.0", "date": "2026-05-29T10:32:25.000Z", "arch": "aarch64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "1cc2fc154b3f9cdef3cb061c4709c9a9647cfac4a160e750c5ebf7ff37d106ac", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "mac", "version": "1.75.0", "date": "2026-05-29T09:26:39.000Z", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "49520b9ca17a8875028b3847a7502909b4e090420c044b4fc2d3f0ccd9798d09", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "wasm", "version": "1.75.0", "date": "2026-05-29T08:42:22.000Z", "arch": "emscripten", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "dc6de071278f980672eeb30f3ee6e7afa78fae1685e3da304eace8111274f73a", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.7.0", "os": "win", "version": "1.75.0", "date": "2026-05-29T08:41:27.000Z", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "d572865f57bf905b8070ef40e3cc36bff9c8689081e8c7296c1e600080728e75", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.5.3", "os": "win", "version": "1.75.0", "date": "2026-05-29T08:41:19.000Z", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "dd4d82a4cd5f911e04f77df3761e60d88fbc5d7cfc4d5dc7678d8b4ce214728c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" }, { "r": "4.6.0", "os": "win", "version": "1.75.0", "date": "2026-05-29T08:41:24.000Z", "arch": "x86_64", "commit": "85f24daaad6accf19d76f604364bc63a848da244", "fileid": "37f7c18ffe2fabbb4fb1f64e022152789446f51e0a69fdeaa7aa6000f9306fcf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627208000" } ] }