Package: BBCAnalyzer 1.35.0

Sarah Sandmann

BBCAnalyzer: BBCAnalyzer: an R/Bioconductor package for visualizing base counts

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

Authors:Sarah Sandmann

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BBCAnalyzer.pdf |BBCAnalyzer.html✨
BBCAnalyzer/json (API)
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Peer review:

On BioConductor:BBCAnalyzer-1.35.0(bioc 3.20)BBCAnalyzer-1.34.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

2 exports 1.16 score 70 dependencies 1 mentions

Last updated 2 months agofrom:876004b60f

Exports:analyzeBasesanalyzeBasesPlotOnly

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsVariantAnnotationvctrsXMLXVectoryamlzlibbioc