{ "_id": "6acf3520d9de2f3f33fc9228", "Package": "BBCAnalyzer", "Type": "Package", "Title": "BBCAnalyzer: an R/Bioconductor package for visualizing base\ncounts", "Version": "1.43.0", "Date": "2016-01-26", "Author": "Sarah Sandmann", "Maintainer": "Sarah Sandmann ", "Description": "BBCAnalyzer is a package for visualizing the relative or\nabsolute number of bases, deletions and insertions at defined\npositions in sequence alignment data available as bam files in\ncomparison to the reference bases. Markers for the relative\nbase frequencies, the mean quality of the detected bases, known\nmutations or polymorphisms and variants called in the data may\nadditionally be included in the plots.", "License": "LGPL-3", "biocViews": "Sequencing, Alignment, Coverage, GeneticVariability, SNP", "NeedsCompilation": "no", "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libpng-dev libxml2-dev\nlibssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:41:42 UTC", "RemoteUrl": "https://github.com/bioc/BBCAnalyzer", "RemoteRef": "HEAD", "RemoteSha": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "Packaged": { "Date": "2026-10-14 07:34:31 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "BBCAnalyzer_1.43.0.tar.gz", "_fileid": "https://r2.ropensci.org/48378428380b47ec90b96a887dca425aa04de5d0d23b8707ed562bf6faa1cf77", "_filesize": 2294663, "_sha256": "48378428380b47ec90b96a887dca425aa04de5d0d23b8707ed562bf6faa1cf77", "_expires": "2027-01-22T07:54:06.000Z", "_created": "2026-10-14T07:34:31.000Z", "_published": "2026-10-14T07:54:08.579Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 14 }, "_upstream": "https://github.com/bioc/BBCAnalyzer", "_commit": { "id": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380102 }, "_maintainer": { "name": "Sarah Sandmann", "email": "sarah.sandmann@uni-muenster.de", "login": "sandmanns", "description": "", "uuid": 30867840 }, "_distro": "resolute", "_jobs": [ { "job": 115737070662, "time": 243, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11876998352" }, { "job": 115737070585, "time": 434, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11877318672" }, { "job": 115737070588, "time": 398, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11877755735" }, { "job": 115737070698, "time": 340, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11877852417" }, { "job": 115737070773, "time": 411, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11877438794" }, { "job": 115733962698, "time": 526, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11877416440" }, { "job": 115737070603, "time": 155, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11877421464" }, { "job": 115737070704, "time": 342, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11877655847" }, { "job": 115737070610, "time": 324, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11877515966" }, { "job": 115737070836, "time": 356, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11878045375" } ], "_registered": true, "_dependencies": [ { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "VariantAnnotation", "role": "Imports" }, { "package": "Rsamtools", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "BSgenome.Hsapiens.UCSC.hg19", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.43.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.42.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "sequencing", "alignment", "coverage", "geneticvariability", "snp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 477, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 589, "source": "https://www.bioconductor.org/packages/stats/bioc/BBCAnalyzer" }, "_mentions": 1, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/BBCAnalyzer.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "analyzeBases", "analyzeBasesPlotOnly" ], "_help": [ { "page": "BBCAnalyzer-package", "title": "BBCAnalyzer: an R/Bioconductor package for visualizing base counts", "topics": [ "Bases By Cigar Analyzer", "Bases Coverage", "BasesByCigar Analyzer", "BasesByCigarAnalyzer", "BBCAnalyzer", "Cigar Analysis" ] }, { "page": "analyzeBases", "title": "Analyze the bases at all previously defined positions", "topics": [ "analyze Bases", "analyzeBases" ] }, { "page": "analyzeBasesPlotOnly", "title": "Plots the number of reads at all previously defined positions", "topics": [ "analyze Bases Plot Only", "analyzeBasesPlotOnly" ] } ], "_rundeps": [ "abind", "AnnotationDbi", "askpass", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bit", "bit64", "bitops", "blob", "BSgenome", "cachem", "cigarillo", "cli", "codetools", "cpp11", "crayon", "curl", "DBI", "DelayedArray", "fastmap", "formatR", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lambda.r", "lattice", "lifecycle", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "RCurl", "restfulr", "Rhtslib", "rjson", "rlang", "Rsamtools", "RSQLite", "rtracklayer", "S4Arrays", "S4Vectors", "Seqinfo", "snow", "SparseArray", "SummarizedExperiment", "sys", "VariantAnnotation", "vctrs", "XML", "XVector", "yaml" ], "_vignettes": [ { "source": "BBCAnalyzer.Rnw", "filename": "BBCAnalyzer.pdf", "title": "Using BBCAnalyzer", "engine": "utils::Sweave", "headings": [], "created": "2015-08-13 21:21:16", "modified": "2018-08-28 22:51:33", "commits": 3 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "bbcanalyzer", "_universes": [ "bioc", "sandmanns" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.43.0", "date": "2026-10-14T07:38:59.000Z", "distro": "resolute", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/5b237baa9116cd5a0671976cdf8f092767d4c9975f47b915480bb1b381d8401c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.6.1", "os": "linux", "version": "1.43.0", "date": "2026-10-14T07:39:14.000Z", "distro": "resolute", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/2025bf87a3eee7d29f10e35a52cdddc6053ec97813ddb635bd32ed343c249169", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.5.3", "os": "mac", "version": "1.43.0", "date": "2026-10-14T07:50:30.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/492b5920db6910a79f11d4a8d5a6053b80109b0430060f03f5c165d178bcafbc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.6.1", "os": "mac", "version": "1.43.0", "date": "2026-10-14T07:49:11.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/1afc82fdca9850bbe5e2f2c562c7d3c92f3cf185a0ba6cb12d3eb038c939a6db", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.6.0", "os": "wasm", "version": "1.43.0", "date": "2026-10-14T07:37:49.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/c410a6a7e4ca132877c5af7f4d79c43d44bb5dd818cbb9df23ebe9189bdf8da9", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.7.0", "os": "win", "version": "1.43.0", "date": "2026-10-14T07:37:37.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/3f5916863941caa1342663b041843328e01c73ee6b60cbb70162345731f04ee6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.5.3", "os": "win", "version": "1.43.0", "date": "2026-10-14T07:37:30.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/be2db3a74010cfb745328f4eea1a678fc7f158eff337de7651e839bec4365801", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" }, { "r": "4.6.1", "os": "win", "version": "1.43.0", "date": "2026-10-14T07:37:33.000Z", "commit": "f670748abbe0c735ff9ff4804f6cb19c0e97cf9e", "fileid": "https://r2.ropensci.org/931c61684c519b547d3c3cfdcd846ad0d61c0d9c4efe460c80439551669df148", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38528316205" } ] }