Package: AnVILVRS 0.99.19

Marcel Ramos

AnVILVRS: Expose the vrs_anvil_toolkit Python package via R

Process Variant Call Format (VCF) files and perform lookup operations on Genomic Variation Representation Service (GA4GH VRS) identifiers. The GA4GH VRS identifiers provide a standardized way to represent genomic variations, making it easier to exchange and share genomic information.

Authors:Marcel Ramos [aut, cre]

AnVILVRS_0.99.19.tar.gz
AnVILVRS_0.99.19.zip(r-4.7)AnVILVRS_0.99.19.zip(r-4.6)AnVILVRS_0.99.19.zip(r-4.5)
AnVILVRS_0.99.19.tgz(r-4.6-any)AnVILVRS_0.99.19.tgz(r-4.5-any)
AnVILVRS_0.99.19.tar.gz(r-4.7-any)AnVILVRS_0.99.19.tar.gz(r-4.6-any)
AnVILVRS_0.99.19.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AnVILVRS/json (API)
NEWS

# Install 'AnVILVRS' in R:

install.packages('AnVILVRS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/anvilvrs/issues

On BioConductor:AnVILVRS-0.99.19(bioc 3.24)

software biologicalquestion variantannotation infrastructure thirdpartyclient u24hg010263

4.70 score 2 scripts 80 downloads 9 exports 52 dependencies

Last updated from:70f940eb2c. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	153
linux-devel-x86_64	OK	215
source / vignettes	OK	235
linux-release-x86_64	OK	224
macos-release-arm64	OK	114
macos-oldrel-arm64	OK	133
windows-devel	OK	122
windows-release	OK	146
windows-oldrel	OK	102
wasm-release	OK	108

Exports:build_vrs_index get_caf get_pop_descriptor get_seqrepo get_variant_from_allele get_vrs_allele get_vrs_id install_AnVILVRS setup_vrs_toolkit

Dependencies:AnVILBase AnVILGCP askpass BiocBaseUtils BiocFileCache bit bit64 blob cachem cli cpp11 curl DBI dbplyr dplyr fastmap filelock GCPtools generics glue here httr httr2 jsonlite lattice lifecycle magrittr Matrix memoise mime openssl pillar pkgconfig png purrr R6 rappdirs Rcpp RcppTOML reticulate rlang rprojroot RSQLite stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr

Using AnVIL VRS Toolkit in R

Marcel Ramos

Rendered fromAnVILVRS.Rmdusingknitr::rmarkdownon Jun 08 2026.

Last update: 2026-04-07
Started: 2025-10-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Generate a VRS-VCF index database	build_vrs_index
Get the allele frequency from 1000 Genomes Project VCF file	get_caf
Downloads the population descriptor file to the BiocFileCache from a known Google Storage URI.	get_pop_descriptor
Run rsync on SeqRepo snapshot	get_seqrepo
Translate a Variant to a VRS ID	get_variant_from_allele get_vrs_allele get_vrs_id
Install AnVILVRS Python Environment	install_AnVILVRS
Set up the VRS AnVIL Toolkit repository	setup_vrs_toolkit