Package: AnVILPublish 1.15.0

Marcel Ramos

AnVILPublish: Publish Packages and Other Resources to AnVIL Workspaces

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Authors:Marcel Ramos [aut, cre], Martin Morgan [aut], Kayla Interdonato [aut], Vincent Carey [ctb]

AnVILPublish_1.15.0.tar.gz
AnVILPublish_1.15.0.zip(r-4.5)AnVILPublish_1.15.0.zip(r-4.4)AnVILPublish_1.15.0.zip(r-4.3)
AnVILPublish_1.15.0.tgz(r-4.4-any)AnVILPublish_1.15.0.tgz(r-4.3-any)
AnVILPublish_1.15.0.tar.gz(r-4.5-noble)AnVILPublish_1.15.0.tar.gz(r-4.4-noble)
AnVILPublish_1.15.0.tgz(r-4.4-emscripten)AnVILPublish_1.15.0.tgz(r-4.3-emscripten)
AnVILPublish.pdf |AnVILPublish.html✨
AnVILPublish/json (API)
NEWS

# Install 'AnVILPublish' in R:

install.packages('AnVILPublish', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:AnVILPublish-1.15.0(bioc 3.20)AnVILPublish-1.14.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 1.24 score 79 dependencies

Last updated 2 months agofrom:06da8412f7

Exports:add_access as_notebook as_workspace

Dependencies:AnVIL askpass base64enc BiocBaseUtils BiocManager bit bit64 bslib cachem cli clipr commonmark cpp11 crayon crosstalk curl digest dplyr DT evaluate fansi fastmap fontawesome formatR fs futile.logger futile.options generics glue highr hms htmltools htmlwidgets httpuv httr jquerylib jsonlite knitr lambda.r later lazyeval lifecycle magrittr memoise mime miniUI openssl pillar pkgconfig prettyunits progress promises purrr R6 rapiclient rappdirs Rcpp readr rlang rmarkdown sass shiny sourcetools stringi stringr sys tibble tidyr tidyselect tinytex tzdb utf8 vctrs vroom whisker withr xfun xtable yaml

Publishing R / Bioconductor Packages To AnVIL Workspaces

Martin Morgan

Rendered fromAnVILPublishIntro.Rmdusingknitr::rmarkdownon Jun 14 2024.

Last update: 2023-10-30
Started: 2020-08-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add Bioconductor_User group to workspace access	add_access
Render vignettes as .ipynb notebooks	as_notebook
Render R packages as AnVIL workspaces	as_workspace