AnVILPublish | Package installation | Package load | Requirements | Best practices | The gcloud SDK and GCPtools | Quarto software | Creating or updating workspaces | From package source | From collections of Rmd files | Updating notebooks or workspace permissions | Updating workspace notebooks from vignettes | Adding user access credentials to share the notebook | Vignette and .Rmd best practices | Orientation | Additional notes on .Rmd conversion | Session info
Package: AnVILPublish 1.23.5
Marcel Ramos
AnVILPublish: Publish Packages and Other Resources to AnVIL Workspaces
Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.
Authors:
AnVILPublish_1.23.5.tar.gz
AnVILPublish_1.23.5.zip(r-4.7)AnVILPublish_1.23.5.zip(r-4.6)AnVILPublish_1.23.5.zip(r-4.5)
AnVILPublish_1.23.5.tgz(r-4.6-any)AnVILPublish_1.23.5.tgz(r-4.5-any)
AnVILPublish_1.23.5.tar.gz(r-4.7-any)AnVILPublish_1.23.5.tar.gz(r-4.6-any)
AnVILPublish_1.23.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AnVILPublish/json (API)
| # Install 'AnVILPublish' in R: |
| install.packages('AnVILPublish', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/anvilpublish/issues
On BioConductor:AnVILPublish-1.23.0(bioc 3.24)AnVILPublish-1.22.0(bioc 3.23)
infrastructuresoftwareu24hg010263
Last updated from:06e578a38e. Checks:8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 164 | ||
| linux-devel-x86_64 | NOTE | 214 | ||
| source / vignettes | OK | 187 | ||
| linux-release-x86_64 | NOTE | 171 | ||
| macos-release-arm64 | NOTE | 85 | ||
| macos-oldrel-arm64 | NOTE | 94 | ||
| windows-devel | NOTE | 111 | ||
| windows-release | NOTE | 88 | ||
| windows-oldrel | NOTE | 103 | ||
| wasm-release | OK | 132 |
Exports:add_accessas_notebookas_workspacecreate_workspace
Dependencies:AnVILAnVILBaseAnVILGCPaskpassbase64encBiocBaseUtilsBiocManagerbitbit64bslibcachemclicliprcommonmarkcpp11crayoncrosstalkcurldigestdplyrDTevaluatefastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsGCPtoolsgenericsgluehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2jquerylibjsonlitekeyringknitrlambda.rlaterlazyevallifecyclemagrittrmemoisemimeminiUIopensslotelpillarpkgconfigprettyunitsprogresspromisespurrrR6rapiclientrappdirsRcppreadrrlangrmarkdownsassshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsvroomwhiskerwithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add Bioconductor_User group to workspace access | add_access |
| Render vignettes as .ipynb notebooks | as_notebook |
| Render R packages as AnVIL workspaces | as_workspace |
| Create an AnVIL Workspace | create_workspace |
