Package: AnVILBase 1.1.0

Marcel Ramos

AnVILBase: Generic functions for interacting with the AnVIL ecosystem

Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.

Authors:Marcel Ramos [aut, cre], Martin Morgan [aut, ctb], NIH NHGRI U24HG004059 [fnd]

AnVILBase_1.1.0.tar.gz
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AnVILBase.pdf |AnVILBase.html✨
AnVILBase/json (API)
NEWS

# Install 'AnVILBase' in R:
install.packages('AnVILBase', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/anvilbase/issues

On BioConductor:AnVILBase-0.99.31(bioc 3.20)

softwareinfrastructure

6.70 score 13 packages 75 scripts 150 downloads 28 exports 25 dependencies

Last updated 23 days agofrom:95da536e7c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:avbackupavcopyavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavplatform_namespaceavremoveavrestoreavstop_for_statusavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtablesavworkflow_jobsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesavworkspaces_cleancloud_platformflattenhas_avworkspacestr

Dependencies:askpassclicurldplyrfansigenericsgluehttrhttr2jsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rappdirsrlangsystibbletidyselectutf8vctrswithr

Introduction to AnVILBase

Bioconductor AnVIL SIG

Rendered fromAnVILBaseIntroduction.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-07-02
Started: 2024-03-08

Readme and manuals

Help Manual

Help pageTopics
The AnVILBase packageAnVILBase-package AnVILBase
All the generics for AnVILAnVILBase-generics avbackup avcopy avlist avremove avrestore avstorage
The AnVILBase methods for 'missing' and 'ANY' signaturesAnVILBase-methods avbackup,ANY-method avbackup,missing-method avcopy,ANY-method avcopy,missing-method avlist,ANY-method avlist,missing-method avremove,ANY-method avremove,missing-method avrestore,ANY-method avrestore,missing-method avstorage,ANY-method avstorage,missing-method
Helper functions for working in AnVILavbase-utilities avstop_for_status avworkspaces_clean
All the avnotebooks generics for AnVILavnotebooks avnotebooks-generics avnotebooks_delocalize avnotebooks_localize
All the notebook type methods for AnVILavnotebooks,ANY-method avnotebooks,missing-method avnotebooks-methods avnotebooks_delocalize,ANY-method avnotebooks_delocalize,missing-method avnotebooks_localize,ANY-method avnotebooks_localize,missing-method
All the table type generics for AnVILavtable avtable-generics avtables avtable_delete avtable_delete_values avtable_import avtable_import_set
The avtable methods for 'missing' and 'ANY' signaturesavtable,ANY-method avtable,missing-method avtable-methods avtables,ANY-method avtables,missing-method avtable_delete,ANY-method avtable_delete,missing-method avtable_delete_values,ANY-method avtable_delete_values,missing-method avtable_import,ANY-method avtable_import,missing-method avtable_import_set,ANY-method avtable_import_set,missing-method
All the workflow type generics for AnVILavworkflow-generics avworkflow_jobs
All the workflow type methods for AnVILavworkflow-methods avworkflow_jobs,ANY-method avworkflow_jobs,missing-method
All the table type generics for AnVILavworkspace avworkspace-generics avworkspaces avworkspace_clone avworkspace_name avworkspace_namespace
The 'avworkspace' methods for 'missing' and 'ANY' signaturesavworkspace,ANY-method avworkspace,missing-method avworkspace-methods avworkspaces,ANY-method avworkspaces,missing-method avworkspace_clone,ANY-method avworkspace_clone,missing-method avworkspace_name,ANY-method avworkspace_name,missing-method avworkspace_namespace,ANY-method avworkspace_namespace,missing-method
Cloud Platform Identifieravplatform_namespace cloud_platform
The generic for checking if the user is within an environmenthas_avworkspace has_avworkspace-generics
The 'has_avworkspace' methods for 'missing' and 'ANY' signatures.has_avworkspace,ANY-method has_avworkspace,missing-method has_avworkspace-methods
Virtual Class for Platform.Platform Platform-class
Process service responses to tibble and other data structures.as.list.response flatten flatten,httr2_response-method flatten,response-method Response str,response-method