{ "_id": "6a493e63a19c9318096e7b18", "Package": "AnVILBase", "Title": "Generic functions for interacting with the AnVIL ecosystem", "Version": "1.7.0", "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Martin\", \"Morgan\", , , c(\"aut\", \"ctb\"),\nc(ORCID = \"0000-0002-5874-8148\")),\nperson(\"NIH NHGRI U24HG004059\", role = \"fnd\")\n)", "Description": "Provides generic functions for interacting with the AnVIL\necosystem. Packages that use either GCP or Azure in AnVIL are\nbuilt on top of AnVILBase. Extension packages will provide\nmethods for interacting with other cloud providers.", "License": "Artistic-2.0", "biocViews": "Software, Infrastructure", "URL": "https://github.com/Bioconductor/AnVILBase", "BugReports": "https://github.com/Bioconductor/AnVILBase/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Date": "2026-04-24", "Config/testthat/edition": "3", "Collate": "'AnVILBase-generics.R' 'AnVILBase-methods.R'\n'AnVILBase-package.R' 'Platform-class.R' 'Response.R'\n'avnotebooks-generics.R' 'avnotebooks-methods.R'\n'avtable-generics.R' 'avtable-methods.R'\n'avworkflow-generics.R' 'avworkflow-methods.R'\n'avworkspace-generics.R' 'avworkspace-methods.R'\n'cloud_platform.R' 'has_avworkspace-generics.R'\n'has_avworkspace-methods.R' 'utilities.R'", "Config/pak/sysreqs": "libssl-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:03:22 UTC", "RemoteUrl": "https://github.com/bioc/AnVILBase", "RemoteRef": "HEAD", "RemoteSha": "3344f923f24cfe11489a15eec059e22fcf29b663", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 03:30:50 UTC", "User": "root" }, "Author": "Marcel Ramos [aut, cre] (ORCID:\n),\nMartin Morgan [aut, ctb] (ORCID:\n),\nNIH NHGRI U24HG004059 [fnd]", "Maintainer": "Marcel Ramos ", "_user": "bioc", "_type": "src", "_file": "AnVILBase_1.7.0.tar.gz", "_fileid": "https://r2.ropensci.org/947b5435e7ebbeeb0223c0cff832ac6ee43b4134a2335821c73b4acc00d8cf43", "_filesize": 144211, "_sha256": "947b5435e7ebbeeb0223c0cff832ac6ee43b4134a2335821c73b4acc00d8cf43", "_expires": "2026-10-12T17:09:53.000Z", "_created": "2026-07-04T03:30:50.000Z", "_published": "2026-07-04T17:09:55.075Z", "_bioccheck": { "error": 0, "warning": 0, "note": 3 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558", "_status": "success", "_upstream": "https://github.com/bioc/AnVILBase", "_commit": { "id": "3344f923f24cfe11489a15eec059e22fcf29b663", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381402 }, "_maintainer": { "name": "Marcel Ramos", "email": "marcel.ramos@sph.cuny.edu", "login": "link-ny", "bluesky": "@mramos148.bsky.social", "linkedin": "in/mramos148", "orcid": "0000-0002-3242-0582", "twitter": "@M2RuseR", "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member / \nR 📦 dev ", "uuid": 4392950 }, "_distro": "resolute", "_jobs": [ { "job": 85150964694, "time": 161, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "8077923228" }, { "job": 85150964654, "time": 192, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8077926344" }, { "job": 85150964719, "time": 201, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8077927322" }, { "job": 85150964660, "time": 85, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8077915496" }, { "job": 85150964780, "time": 130, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8077920075" }, { "job": 85150964511, "time": 193, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8077906011" }, { "job": 85150964689, "time": 151, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8077922389" }, { "job": 85150964771, "time": 93, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8077916224" }, { "job": 85150964953, "time": 91, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8077916078" }, { "job": 85150964851, "time": 85, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8077915514" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "httr", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "AnVIL", "role": "Suggests" }, { "package": "AnVILAz", "role": "Suggests" }, { "package": "AnVILGCP", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "GCPtools", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 17, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2025-46", "n": 3 }, { "week": "2026-17", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.7.0", "bioc": "3.24" }, { "branch": "release", "version": "1.6.0", "bioc": "3.23" } ], "_topics": [ "software", "infrastructure", "u24hg010263" ], "_stars": 0, "_contributors": [ { "user": "link-ny", "count": 11, "uuid": 4392950 }, { "user": "jwokaty", "count": 8, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/bioconductor/anvilbase", "_searchresults": 77, "_rbuild": "4.6.1", "_assets": [ "extra/AnVILBase.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/anvilbase", "_realowner": "bioc", "_cranurl": false, "_exports": [ "avbackup", "avcopy", "avlist", "avnotebooks", "avnotebooks_delocalize", "avnotebooks_localize", "avplatform_namespace", "avremove", "avrestore", "avstop_for_status", "avstorage", "avtable", "avtable_delete", "avtable_delete_values", "avtable_import", "avtable_import_set", "avtables", "avworkflow_jobs", "avworkspace", "avworkspace_clone", "avworkspace_name", "avworkspace_namespace", "avworkspaces", "avworkspaces_clean", "cloud_platform", "flatten", "has_avworkspace", "str" ], "_help": [ { "page": "AnVILBase-package", "title": "The AnVILBase package", "topics": [ "AnVILBase-package", "AnVILBase" ] }, { "page": "AnVILBase-generics", "title": "All the generics for AnVIL", "topics": [ "AnVILBase-generics", "avbackup", "avcopy", "avlist", "avremove", "avrestore", "avstorage" ] }, { "page": "AnVILBase-methods", "title": "The AnVILBase methods for 'missing' and 'ANY' signatures", "topics": [ "AnVILBase-methods", "avbackup,ANY-method", "avbackup,missing-method", "avcopy,ANY-method", "avcopy,missing-method", "avlist,ANY-method", "avlist,missing-method", "avremove,ANY-method", "avremove,missing-method", "avrestore,ANY-method", "avrestore,missing-method", "avstorage,ANY-method", "avstorage,missing-method" ] }, { "page": "avbase-utilities", "title": "Helper functions for working in AnVIL", "topics": [ "avbase-utilities", "avstop_for_status", "avworkspaces_clean" ] }, { "page": "avnotebooks-generics", "title": "All the avnotebooks generics for AnVIL", "topics": [ "avnotebooks", "avnotebooks-generics", "avnotebooks_delocalize", "avnotebooks_localize" ] }, { "page": "avnotebooks-methods", "title": "All the notebook type methods for AnVIL", "topics": [ "avnotebooks,ANY-method", "avnotebooks,missing-method", "avnotebooks-methods", "avnotebooks_delocalize,ANY-method", "avnotebooks_delocalize,missing-method", "avnotebooks_localize,ANY-method", "avnotebooks_localize,missing-method" ] }, { "page": "avtable-generics", "title": "All the table type generics for AnVIL", "topics": [ "avtable", "avtable-generics", "avtables", "avtable_delete", "avtable_delete_values", "avtable_import", "avtable_import_set" ] }, { "page": "avtable-methods", "title": "The avtable methods for 'missing' and 'ANY' signatures", "topics": [ "avtable,ANY-method", "avtable,missing-method", "avtable-methods", "avtables,ANY-method", "avtables,missing-method", "avtable_delete,ANY-method", "avtable_delete,missing-method", "avtable_delete_values,ANY-method", "avtable_delete_values,missing-method", "avtable_import,ANY-method", "avtable_import,missing-method", "avtable_import_set,ANY-method", "avtable_import_set,missing-method" ] }, { "page": "avworkflow-generics", "title": "All the workflow type generics for AnVIL", "topics": [ "avworkflow-generics", "avworkflow_jobs" ] }, { "page": "avworkflow-methods", "title": "All the workflow type methods for AnVIL", "topics": [ "avworkflow-methods", "avworkflow_jobs,ANY-method", "avworkflow_jobs,missing-method" ] }, { "page": "avworkspace-generics", "title": "All the table type generics for AnVIL", "topics": [ "avworkspace", "avworkspace-generics", "avworkspaces", "avworkspace_clone", "avworkspace_name", "avworkspace_namespace" ] }, { "page": "avworkspace-methods", "title": "The 'avworkspace' methods for 'missing' and 'ANY' signatures", "topics": [ "avworkspace,ANY-method", "avworkspace,missing-method", "avworkspace-methods", "avworkspaces,ANY-method", "avworkspaces,missing-method", "avworkspace_clone,ANY-method", "avworkspace_clone,missing-method", "avworkspace_name,ANY-method", "avworkspace_name,missing-method", "avworkspace_namespace,ANY-method", "avworkspace_namespace,missing-method" ] }, { "page": "cloud_platform", "title": "Cloud Platform Identifier", "topics": [ "avplatform_namespace", "cloud_platform" ] }, { "page": "has_avworkspace-generics", "title": "The generic for checking if the user is within an environment", "topics": [ "has_avworkspace", "has_avworkspace-generics" ] }, { "page": "has_avworkspace-methods", "title": "The 'has_avworkspace' methods for 'missing' and 'ANY' signatures.", "topics": [ "has_avworkspace,ANY-method", "has_avworkspace,missing-method", "has_avworkspace-methods" ] }, { "page": "Platform-class", "title": "Virtual Class for Platform", "topics": [ ".Platform", "Platform-class" ] }, { "page": "Response", "title": "Process service responses to tibble and other data structures.", "topics": [ "as.list.response", "flatten", "flatten,httr2_response-method", "flatten,response-method", "Response", "str,response-method" ] } ], "_rundeps": [ "askpass", "cli", "curl", "dplyr", "generics", "glue", "httr", "httr2", "jsonlite", "lifecycle", "magrittr", "mime", "openssl", "pillar", "pkgconfig", "R6", "rappdirs", "rlang", "sys", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "AnVILBaseIntroduction.Rmd", "filename": "AnVILBaseIntroduction.html", "title": "Introduction to AnVILBase", "author": "Bioconductor AnVIL SIG", "engine": "knitr::rmarkdown", "headings": [ "Installation", "Introduction", "Overview", "Cloud Platforms", "Developer Note", "Base generics", "Table generics", "Workspace generics", "Workflow generics", "Notebook generics", "sessionInfo" ], "created": "2024-03-08 15:51:06", "modified": "2024-07-02 16:22:29", "commits": 5 } ], "_score": 6.196120892598381, "_indexed": true, "_nocasepkg": "anvilbase", "_universes": [ "bioc", "link-ny", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.7.0", "date": "2026-07-04T03:34:02.000Z", "distro": "resolute", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/94de0d06d951159d9e55c2367b25d1b66d7d46a7d40dc90a0eb90e2178348fdd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.6.1", "os": "linux", "version": "1.7.0", "date": "2026-07-04T03:34:12.000Z", "distro": "resolute", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/6865605ad9328742227e17ae711af1adfb32886f46d9822fbcda32d487ace15f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.5.3", "os": "mac", "version": "1.7.0", "date": "2026-07-04T03:32:22.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/2548b09d2e97961545f64922f5ea239c76440caffedfb9a89c73828434748009", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.6.1", "os": "mac", "version": "1.7.0", "date": "2026-07-04T03:32:56.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/45d010eea4a49cf3cb2f536d30c9578a41ce6e0e1e197d60375e73cbf0d80efd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.6.0", "os": "wasm", "version": "1.7.0", "date": "2026-07-04T03:33:41.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/aa60ee0cd9ec9f6d0b4c8d2c22ce1497eec91bd085cd8990fd9c834b1790cbe9", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.7.0", "os": "win", "version": "1.7.0", "date": "2026-07-04T03:32:17.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/12ff467da345272b5eabd6004ecbb16ca20d4b46278e0d9a2fe35482801561d7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.5.3", "os": "win", "version": "1.7.0", "date": "2026-07-04T03:32:12.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/b3474caf460e45037c2f790b10e03cd805c3c606fadc56f4772211eed93e010f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" }, { "r": "4.6.1", "os": "win", "version": "1.7.0", "date": "2026-07-04T03:32:09.000Z", "commit": "3344f923f24cfe11489a15eec059e22fcf29b663", "fileid": "https://r2.ropensci.org/e14faef99e3786286f486d8b7b15e42a5773e645e5d013678c01d29c5d87daae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28693515558" } ] }