Package: AnVILAz 1.1.0
Marcel Ramos
AnVILAz: R / Bioconductor Support for the AnVIL Azure Platform
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVILAz package supports end-users and developers using the AnVIL platform in the Azure cloud. The package provides a programmatic interface to AnVIL resources, including workspaces, notebooks, tables, and workflows. The package also provides utilities for managing resources, including copying files to and from Azure Blob Storage, and creating shared access signatures (SAS) for secure access to Azure resources.
Authors:
AnVILAz_1.1.0.tar.gz
AnVILAz_1.1.0.zip(r-4.5)AnVILAz_1.1.0.zip(r-4.4)AnVILAz_1.1.0.zip(r-4.3)
AnVILAz_1.1.0.tgz(r-4.4-any)AnVILAz_1.1.0.tgz(r-4.3-any)
AnVILAz_1.1.0.tar.gz(r-4.5-noble)AnVILAz_1.1.0.tar.gz(r-4.4-noble)
AnVILAz_1.1.0.tgz(r-4.4-emscripten)AnVILAz_1.1.0.tgz(r-4.3-emscripten)
AnVILAz.pdf |AnVILAz.html✨
AnVILAz/json (API)
NEWS
| # Install 'AnVILAz' in R: |
| install.packages('AnVILAz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/anvilaz/issues
On BioConductor:AnVILAz-1.1.0(bioc 3.21)AnVILAz-1.0.0(bioc 3.20)
softwareinfrastructurethirdpartyclient
Last updated 2 months agofrom:3d011054e5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | OK | Nov 29 2024 |
| R-4.5-linux | OK | Nov 29 2024 |
| R-4.4-win | OK | Nov 29 2024 |
| R-4.4-mac | OK | Nov 29 2024 |
| R-4.3-win | OK | Nov 29 2024 |
| R-4.3-mac | OK | Nov 29 2024 |
Exports:avbackupavcopyavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavremoveavrestoreavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtablesavworkflow_jobsavworkflow_jobs_inputsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesaz_existsaz_health_checkaz_sas_tokenazurecbas_urlhas_avworkspacewds_api_versionworkspace_data_service_urlworkspace_idworkspace_storage_cont_idworkspace_storage_cont_url
Dependencies:AnVILBaseaskpassBiocBaseUtilsclicpp11curldplyrfansigenericsgluehttrhttr2jsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rappdirsrjsonconsrlangsystibbletidyselectutf8vctrswithr
Introduction to the AnVILAz package
Rendered fromIntroductionToAnVILAz.Rmdusingknitr::rmarkdownon Nov 29 2024.Last update: 2024-10-22
Started: 2022-12-20
Working with workspaces on AnVIL Azure
Rendered fromAnVILAzWorkspaces.Rmdusingknitr::rmarkdownon Nov 29 2024.Last update: 2024-10-22
Started: 2024-03-22
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Azure Notebook Management | avnotebooks avnotebooks,azure-method avnotebooks-methods avnotebooks_delocalize avnotebooks_delocalize,azure-method avnotebooks_localize avnotebooks_localize,azure-method |
| AnVIL Azure table ("type") methods | avtable avtable,azure-method avtable-methods avtables avtables,azure-method avtable_delete avtable_delete,azure-method avtable_delete_values avtable_delete_values,azure-method avtable_import avtable_import,azure-method avtable_import_set avtable_import_set,azure-method |
| Azure Workflow methods | avworkflow-methods avworkflow_jobs avworkflow_jobs,azure-method avworkflow_jobs_inputs |
| AnVIL Azure Workspace methods | avworkspace,azure-method avworkspace-methods avworkspaces,azure-method avworkspace_clone,azure-method avworkspace_name,azure-method avworkspace_namespace,azure-method |
| Obtain the Shared Access Signature (SAS) for the Azure Storage | az_sas_token |
| az health check helpers | az-utilities az_exists az_health_check |
| Azure platform class | .azure azure azure-class |
| A number of methods compatible with the Azure platform class. | avbackup,azure-method avcopy,azure-method avlist,azure-method avremove,azure-method avrestore,azure-method avstorage,azure-method azure-methods |
| Helper to check if the current environment is within an Azure workspace | has_avworkspace,azure-method has_avworkspace-methods |
| Access Terra on Azure workspace session variables | cbas_url wds_api_version workspace-env workspace_data_service_url workspace_id workspace_storage_container_id workspace_storage_container_url workspace_storage_cont_id workspace_storage_cont_url |
