Package: AnVILAz 0.99.19

Marcel Ramos

AnVILAz: R / Bioconductor Support for the AnVIL Azure Platform

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVILAz package supports end-users and developers using the AnVIL platform in the Azure cloud. The package provides a programmatic interface to AnVIL resources, including workspaces, notebooks, tables, and workflows. The package also provides utilities for managing resources, including copying files to and from Azure Blob Storage, and creating shared access signatures (SAS) for secure access to Azure resources.

Authors:Martin Morgan [aut, ctb], Marcel Ramos [aut, cre]

AnVILAz_0.99.19.tar.gz
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AnVILAz_0.99.19.tgz(r-4.4-any)AnVILAz_0.99.19.tgz(r-4.3-any)
AnVILAz_0.99.19.tar.gz(r-4.5-noble)AnVILAz_0.99.19.tar.gz(r-4.4-noble)
AnVILAz_0.99.19.tgz(r-4.4-emscripten)AnVILAz_0.99.19.tgz(r-4.3-emscripten)
AnVILAz.pdf |AnVILAz.html
AnVILAz/json (API)
NEWS

# Install 'AnVILAz' in R:
install.packages('AnVILAz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/anvilaz/issues

On BioConductor:AnVILAz-0.99.16(bioc 3.20)

softwareinfrastructurethirdpartyclient

32 exports 1.80 score 29 dependencies 5 scripts

Last updated 20 days agofrom:89ae1559f1. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 28 2024
R-4.5-winOKAug 28 2024
R-4.5-linuxOKAug 28 2024
R-4.4-winOKAug 28 2024
R-4.4-macOKAug 28 2024
R-4.3-winOKAug 28 2024
R-4.3-macOKAug 28 2024

Exports:avbackupavcopyavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavremoveavrestoreavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtablesavworkflow_jobsavworkflow_jobs_inputsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesaz_existsaz_health_checkaz_sas_tokenazurecbas_urlwds_api_versionworkspace_data_service_urlworkspace_idworkspace_storage_cont_idworkspace_storage_cont_url

Dependencies:AnVILBaseaskpassBiocBaseUtilsclicpp11curldplyrfansigenericsgluehttrhttr2jsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rappdirsrjsonconsrlangsystibbletidyselectutf8vctrswithr

Introduction to the AnVILAz package

Rendered fromIntroductionToAnVILAz.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2024-08-27
Started: 2022-12-20

Working with workspaces on AnVIL Azure

Rendered fromAnVILAzWorkspaces.Rmdusingknitr::rmarkdownon Aug 28 2024.

Last update: 2024-08-27
Started: 2024-03-22

Readme and manuals

Help Manual

Help pageTopics
Azure Notebook Managementavnotebooks avnotebooks,azure-method avnotebooks-methods avnotebooks_delocalize avnotebooks_delocalize,azure-method avnotebooks_localize avnotebooks_localize,azure-method
AnVIL Azure table ("type") methodsavtable avtable,azure-method avtable-methods avtables avtables,azure-method avtable_delete avtable_delete,azure-method avtable_delete_values avtable_delete_values,azure-method avtable_import avtable_import,azure-method avtable_import_set avtable_import_set,azure-method
Azure Workflow methodsavworkflow-methods avworkflow_jobs avworkflow_jobs,azure-method avworkflow_jobs_inputs
AnVIL Azure Workspace methodsavworkspace,azure-method avworkspace-methods avworkspaces,azure-method avworkspace_clone,azure-method avworkspace_name,azure-method avworkspace_namespace,azure-method
Obtain the Shared Access Signature (SAS) for the Azure Storageaz_sas_token
az health check helpersaz-utilities az_exists az_health_check
Azure platform class.azure azure azure-class
A number of methods compatible with the Azure platform class.avbackup,azure-method avcopy,azure-method avlist,azure-method avremove,azure-method avrestore,azure-method avstorage,azure-method azure-methods
Access Terra on Azure workspace session variablescbas_url wds_api_version workspace-env workspace_data_service_url workspace_id workspace_storage_container_id workspace_storage_container_url workspace_storage_cont_id workspace_storage_cont_url