{
  "_id": "6a645c06059529545f576741",
  "Package": "AnVILAz",
  "Title": "R / Bioconductor Support for the AnVIL Azure Platform",
  "Version": "1.7.2",
  "Date": "2026-05-26",
  "Authors@R": "c(person(\n\"Martin\", \"Morgan\", role = c(\"aut\", \"ctb\"),\nemail = \"mtmorgan.bioc@gmail.com\",\ncomment = c(ORCID = \"0000-0002-5874-8148\")\n),\nperson(\n\"Marcel\", \"Ramos\", role = c(\"aut\", \"cre\"),\nemail = \"marcel.ramos@sph.cuny.edu\",\ncomment = c(ORCID = \"0000-0002-3242-0582\")\n))",
  "Description": "The AnVIL is a cloud computing resource developed in part\nby the National Human Genome Research Institute. The AnVILAz\npackage supports end-users and developers using the AnVIL\nplatform in the Azure cloud. The package provides a\nprogrammatic interface to AnVIL resources, including\nworkspaces, notebooks, tables, and workflows. The package also\nprovides utilities for managing resources, including copying\nfiles to and from Azure Blob Storage, and creating shared\naccess signatures (SAS) for secure access to Azure resources.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "biocViews": "Software, Infrastructure, ThirdPartyClient",
  "Roxygen": "list(markdown = TRUE)",
  "SystemRequirements": "az, azcopy",
  "BugReports": "https://github.com/Bioconductor/AnVILAz/issues",
  "URL": "https://github.com/Bioconductor/AnVILAz",
  "VignetteBuilder": "knitr",
  "Collate": "'AnVILAz-package.R' 'authentication.R' 'azure-class.R'\n'avnotebooks-methods.R' 'avtable-methods.R'\n'avworkflow-methods.R' 'avworkspace-methods.R' 'az-utilities.R'\n'az_copy-helpers.R' 'az_sas_token.R' 'azure-methods.R'\n'has_avworkspace-methods.R' 'resources.R' 'utilities.R'\n'workspace-dev-ops.R' 'workspace_env.R' 'zzz.R'",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-26 20:27:05 UTC",
  "RemoteUrl": "https://github.com/bioc/AnVILAz",
  "RemoteRef": "HEAD",
  "RemoteSha": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-25 06:42:48 UTC",
    "User": "root"
  },
  "Author": "Martin Morgan [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-5874-8148>),\nMarcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>)",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "AnVILAz_1.7.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/0f59960ba26e0c7c160efd8c42dca0ada1594e462910953f8f3c598097e57c95",
  "_filesize": 380052,
  "_sha256": "0f59960ba26e0c7c160efd8c42dca0ada1594e462910953f8f3c598097e57c95",
  "_expires": "2026-11-02T06:47:32.000Z",
  "_created": "2026-07-25T06:42:48.000Z",
  "_published": "2026-07-25T06:47:33.916Z",
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 2
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641",
  "_status": "success",
  "_upstream": "https://github.com/bioc/AnVILAz",
  "_commit": {
    "id": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
    "author": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "committer": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "message": "version bump 1.7.2\n",
    "time": 1779827225
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 89653336217,
      "time": 166,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8616680184"
    },
    {
      "job": 89653336232,
      "time": 186,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8616684053"
    },
    {
      "job": 89653336225,
      "time": 243,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8616693989"
    },
    {
      "job": 89653336215,
      "time": 122,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8616675023"
    },
    {
      "job": 89653336250,
      "time": 109,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8616672544"
    },
    {
      "job": 89653072740,
      "time": 199,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8616651414"
    },
    {
      "job": 89653336208,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8616671603"
    },
    {
      "job": 89653336236,
      "time": 89,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8616667620"
    },
    {
      "job": 89653336240,
      "time": 81,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8616665854"
    },
    {
      "job": 89653336260,
      "time": 84,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8616666916"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "AnVILBase",
      "role": "Imports"
    },
    {
      "package": "BiocBaseUtils",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rjsoncons",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 7
    },
    {
      "week": "2026-22",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.2",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "thirdpartyclient",
    "u24hg010263"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 27,
      "uuid": 4392950
    },
    {
      "user": "jwokaty",
      "count": 8,
      "uuid": 1744257
    },
    {
      "user": "mtmorgan",
      "count": 1,
      "uuid": 118552
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 451,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 256,
    "source": "https://www.bioconductor.org/packages/stats/bioc/AnVILAz"
  },
  "_devurl": "https://github.com/bioconductor/anvilaz",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/AnVILAz.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/anvilaz",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "avbackup",
    "avcopy",
    "avlist",
    "avnotebooks",
    "avnotebooks_delocalize",
    "avnotebooks_localize",
    "avremove",
    "avrestore",
    "avstorage",
    "avtable",
    "avtable_delete",
    "avtable_delete_values",
    "avtable_import",
    "avtable_import_set",
    "avtables",
    "avworkflow_jobs",
    "avworkflow_jobs_inputs",
    "avworkspace",
    "avworkspace_clone",
    "avworkspace_name",
    "avworkspace_namespace",
    "avworkspaces",
    "az_exists",
    "az_health_check",
    "az_sas_token",
    "azure",
    "cbas_url",
    "has_avworkspace",
    "wds_api_version",
    "workspace_data_service_url",
    "workspace_id",
    "workspace_storage_cont_id",
    "workspace_storage_cont_url"
  ],
  "_help": [
    {
      "page": "avnotebooks-methods",
      "title": "Azure Notebook Management",
      "topics": [
        "avnotebooks",
        "avnotebooks,azure-method",
        "avnotebooks-methods",
        "avnotebooks_delocalize",
        "avnotebooks_delocalize,azure-method",
        "avnotebooks_localize",
        "avnotebooks_localize,azure-method"
      ]
    },
    {
      "page": "avtable-methods",
      "title": "AnVIL Azure table (\"type\") methods",
      "topics": [
        "avtable",
        "avtable,azure-method",
        "avtable-methods",
        "avtables",
        "avtables,azure-method",
        "avtable_delete",
        "avtable_delete,azure-method",
        "avtable_delete_values",
        "avtable_delete_values,azure-method",
        "avtable_import",
        "avtable_import,azure-method",
        "avtable_import_set",
        "avtable_import_set,azure-method"
      ]
    },
    {
      "page": "avworkflow-methods",
      "title": "Azure Workflow methods",
      "topics": [
        "avworkflow-methods",
        "avworkflow_jobs",
        "avworkflow_jobs,azure-method",
        "avworkflow_jobs_inputs"
      ]
    },
    {
      "page": "avworkspace-methods",
      "title": "AnVIL Azure Workspace methods",
      "topics": [
        "avworkspace,azure-method",
        "avworkspace-methods",
        "avworkspaces,azure-method",
        "avworkspace_clone,azure-method",
        "avworkspace_name,azure-method",
        "avworkspace_namespace,azure-method"
      ]
    },
    {
      "page": "az_sas_token",
      "title": "Obtain the Shared Access Signature (SAS) for the Azure Storage",
      "topics": [
        "az_sas_token"
      ]
    },
    {
      "page": "az-utilities",
      "title": "az health check helpers",
      "topics": [
        "az-utilities",
        "az_exists",
        "az_health_check"
      ]
    },
    {
      "page": "azure-class",
      "title": "Azure platform class",
      "topics": [
        ".azure",
        "azure",
        "azure-class"
      ]
    },
    {
      "page": "azure-methods",
      "title": "A number of methods compatible with the Azure platform class.",
      "topics": [
        "avbackup,azure-method",
        "avcopy,azure-method",
        "avlist,azure-method",
        "avremove,azure-method",
        "avrestore,azure-method",
        "avstorage,azure-method",
        "azure-methods"
      ]
    },
    {
      "page": "has_avworkspace-methods",
      "title": "Helper to check if the current environment is within an Azure workspace",
      "topics": [
        "has_avworkspace,azure-method",
        "has_avworkspace-methods"
      ]
    },
    {
      "page": "workspace-env",
      "title": "Access Terra on Azure workspace session variables",
      "topics": [
        "cbas_url",
        "wds_api_version",
        "workspace-env",
        "workspace_data_service_url",
        "workspace_id",
        "workspace_storage_container_id",
        "workspace_storage_container_url",
        "workspace_storage_cont_id",
        "workspace_storage_cont_url"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/AnVILAz/raw/HEAD/README.md",
  "_rundeps": [
    "AnVILBase",
    "askpass",
    "BiocBaseUtils",
    "cli",
    "cpp11",
    "curl",
    "dplyr",
    "generics",
    "glue",
    "httr",
    "httr2",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "R6",
    "rjsoncons",
    "rlang",
    "sys",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "IntroductionToAnVILAz.Rmd",
      "filename": "IntroductionToAnVILAz.html",
      "title": "Introduction to the AnVILAz package",
      "author": "Marcel Ramos, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "File Management",
        "List Azure Blob Storage Container Files",
        "Uploading a file",
        "Deleting a file",
        "Downloading from the ABS",
        "Folder-wise upload to ABS",
        "Folder-wise download from ABS",
        "The DATA tab",
        "mtcars example",
        "Uploading data",
        "Downloading data",
        "Delete a row in the table",
        "Delete entire table",
        "Bug Reports",
        "Session information"
      ],
      "created": "2022-12-20 17:25:31",
      "modified": "2026-05-22 21:26:45",
      "commits": 21
    },
    {
      "source": "AnVILAzWorkspaces.Rmd",
      "filename": "AnVILAzWorkspaces.html",
      "title": "Working with workspaces on AnVIL Azure",
      "author": "Marcel Ramos, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Workspaces",
        "Listing workspaces",
        "Caveats",
        "Current workspace",
        "Setting the current workspace",
        "Namespace and workspace",
        "Cloning a workspace",
        "Deleting a workspace",
        "Notebooks",
        "Localize / Delocalize",
        "Workflows",
        "Listing current workflow runs",
        "Listing workflow inputs",
        "sessionInfo"
      ],
      "created": "2024-03-22 19:02:11",
      "modified": "2024-10-22 16:16:07",
      "commits": 5
    }
  ],
  "_score": 5.079181246047625,
  "_indexed": true,
  "_nocasepkg": "anvilaz",
  "_universes": [
    "bioc",
    "link-ny",
    "bioconductor"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.2",
      "date": "2026-07-25T06:45:55.000Z",
      "distro": "resolute",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/2e3a719ce47c7e4a797b2da8700611b329181426a728615be0d85887444d61da",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.7.2",
      "date": "2026-07-25T06:46:51.000Z",
      "distro": "resolute",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/1c833b68f35daeb71ede4b46d99c7d33091ccc48aa2a6843706dbaf23726448a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.2",
      "date": "2026-07-25T06:45:01.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/3b8c6f307fe111d11322cc44bb72f924916ec5708ad046b80a0a7e54a530248d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.7.2",
      "date": "2026-07-25T06:44:47.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/9630190c0c1ab26c4ef51a61819f96f4f544e308758cd047b104b47e826281a6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.2",
      "date": "2026-07-25T06:45:00.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/8bfd870bf46027f4769551d5667ef17219dd5fb1a088fad6fef56e22a78eebdc",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.2",
      "date": "2026-07-25T06:44:13.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/7f97c49bf9a771f08a16a7c8d218ce5f1c0ffd0d76512d2520daf851ab3b0064",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.2",
      "date": "2026-07-25T06:44:03.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/976532a3aec35466def50d0b3e07734a4ffac4324eb67fec6a71d946872afba6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.7.2",
      "date": "2026-07-25T06:44:10.000Z",
      "commit": "89e3a4bc79c91664afd02f0fb8fcc59878191a0e",
      "fileid": "https://r2.ropensci.org/1de11564438284c1f6c49edb7e09999717d9f3389b44803fd68153859c7331ff",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/30147881641"
    }
  ]
}