Package: AffyRNADegradation 1.53.0
Mario Fasold
AffyRNADegradation: Analyze and correct probe positional bias in microarray data due to RNA degradation
The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.
Authors:
AffyRNADegradation_1.53.0.tar.gz
AffyRNADegradation_1.53.0.zip(r-4.5)AffyRNADegradation_1.53.0.zip(r-4.4)AffyRNADegradation_1.53.0.zip(r-4.3)
AffyRNADegradation_1.53.0.tgz(r-4.4-any)AffyRNADegradation_1.53.0.tgz(r-4.3-any)
AffyRNADegradation_1.53.0.tar.gz(r-4.5-noble)AffyRNADegradation_1.53.0.tar.gz(r-4.4-noble)
AffyRNADegradation_1.53.0.tgz(r-4.4-emscripten)AffyRNADegradation_1.53.0.tgz(r-4.3-emscripten)
AffyRNADegradation.pdf |AffyRNADegradation.html✨
AffyRNADegradation/json (API)
NEWS
| # Install 'AffyRNADegradation' in R: |
| install.packages('AffyRNADegradation', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:AffyRNADegradation-1.51.0(bioc 3.20)AffyRNADegradation-1.50.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneexpressionmicroarrayonechannelpreprocessingqualitycontrol
Last updated 23 days agofrom:7b43dc2929. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 30 2024 |
Exports:afbatchdGetTongsPlotDegradationHooksplotDxPlotTongsRNADegradation
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerpreprocessCorezlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class AffyDegradationBatch | afbatch afbatch,AffyDegradationBatch-method AffyDegradationBatch AffyDegradationBatch,ANY AffyDegradationBatch-class d d,AffyDegradationBatch-method plotDx plotDx,AffyDegradationBatch-method |
| AffyRNADegradation: analyze and correct RNA degradation effects | AffyRNADegradation-package AffyRNADegradation |
| Generate and visualize the tongs plot | GetTongs PlotDegradationHooks PlotTongs |
| Compute degradation parameters and correct probe intensities | RNADegradation |