Package: AIMS 1.45.0

Eric R Paquet

AIMS: AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Authors:Eric R. Paquet, Michael T. Hallett

AIMS_1.45.0.tar.gz
AIMS_1.45.0.zip(r-4.7)AIMS_1.45.0.zip(r-4.6)AIMS_1.45.0.zip(r-4.5)
AIMS_1.45.0.tgz(r-4.6-any)AIMS_1.45.0.tgz(r-4.5-any)
AIMS_1.45.0.tar.gz(r-4.7-any)AIMS_1.45.0.tar.gz(r-4.6-any)
AIMS_1.45.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
AIMS/json (API)

# Install 'AIMS' in R:

install.packages('AIMS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

AIMSmodel - The AIMS model
mcgillExample - Sample of a breast cancer gene expression dataset generated at McGill University

On BioConductor:AIMS-1.45.0(bioc 3.24)AIMS-1.44.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology classification rnaseq microarray software geneexpression

5.38 score 4 packages 9 scripts 890 downloads 77 mentions 1 exports 7 dependencies

Last updated from:db954534ee. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	240
linux-devel-x86_64	NOTE	264
source / vignettes	OK	303
linux-release-x86_64	NOTE	261
macos-release-arm64	NOTE	164
macos-oldrel-arm64	NOTE	97
windows-devel	NOTE	549
windows-release	NOTE	515
windows-oldrel	NOTE	456
wasm-release	OK	194

Exports:applyAIMS

Dependencies:Biobase BiocGenerics class e1071 generics MASS proxy

AIMS An Introduction (HowTo)

Introduction | Case Study: Assigning breast cancer subtype to a dataset of breast cancer microarray data | Session Info

Rendered fromAIMS.Rnwusingutils::Sweave

Last update: 2014-08-14
Started: 2014-08-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The AIMS model	AIMSmodel
Function that will assign the AIMS subtype to a gene expression matrix	applyAIMS
Sample of a breast cancer gene expression dataset generated at McGill University	mcgillExample