Package: AHMassBank 1.7.0

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.7.0.tar.gz
AHMassBank_1.7.0.zip(r-4.5)AHMassBank_1.7.0.zip(r-4.4)AHMassBank_1.7.0.zip(r-4.3)
AHMassBank_1.7.0.tgz(r-4.4-any)AHMassBank_1.7.0.tgz(r-4.3-any)
AHMassBank_1.7.0.tar.gz(r-4.5-noble)AHMassBank_1.7.0.tar.gz(r-4.4-noble)
AHMassBank_1.7.0.tgz(r-4.4-emscripten)AHMassBank_1.7.0.tgz(r-4.3-emscripten)
AHMassBank.pdf |AHMassBank.html
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.7.0(bioc 3.21)AHMassBank-1.6.0(bioc 3.20)

massspectrometryannotationhubsoftware

3.30 score 1 stars 128 downloads 0 exports 114 dependencies

Last updated 3 months agofrom:4e9a223181. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 17 2025
R-4.5-winOKJan 17 2025
R-4.5-linuxOKJan 17 2025
R-4.4-winOKJan 17 2025
R-4.4-macOKJan 17 2025
R-4.3-winOKJan 17 2025
R-4.3-macOKJan 17 2025

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsbiomaRtBiostringsbitbit64bitopsblobcachemcallrclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrevaluatefansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhmshttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprocessxprogresspspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrsnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryaml

MassBank Data for AnnotationHub

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon Jan 17 2025.

Last update: 2023-03-29
Started: 2022-08-30