Package: AHMassBank 1.5.0

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.5.0.tar.gz
AHMassBank_1.5.0.zip(r-4.5)AHMassBank_1.5.0.zip(r-4.4)AHMassBank_1.5.0.zip(r-4.3)
AHMassBank_1.5.0.tgz(r-4.4-any)AHMassBank_1.5.0.tgz(r-4.3-any)
AHMassBank_1.5.0.tar.gz(r-4.5-noble)AHMassBank_1.5.0.tar.gz(r-4.4-noble)
AHMassBank_1.5.0.tgz(r-4.4-emscripten)AHMassBank_1.5.0.tgz(r-4.3-emscripten)
AHMassBank.pdf |AHMassBank.html✨
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.5.0(bioc 3.20)AHMassBank-1.4.0(bioc 3.19)

bioconductor-package

0 exports 0.49 score 115 dependencies

Last updated 2 months agofrom:ba4122730e

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsbiomaRtBiostringsbitbit64bitopsblobcachemcallrclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrevaluatefansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhmshttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprocessxprogresspspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrsnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryamlzlibbioc

MassBank Data for AnnotationHub

Johannes Rainer

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon Jun 13 2024.

Last update: 2023-03-29
Started: 2022-08-30