Package: AHMassBank 1.13.0

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.13.0.tar.gz
AHMassBank_1.13.0.zip(r-4.7)AHMassBank_1.13.0.zip(r-4.6)AHMassBank_1.13.0.zip(r-4.5)
AHMassBank_1.13.0.tgz(r-4.6-any)AHMassBank_1.13.0.tgz(r-4.5-any)
AHMassBank_1.13.0.tar.gz(r-4.7-any)AHMassBank_1.13.0.tar.gz(r-4.6-any)
AHMassBank_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.13.0(bioc 3.24)AHMassBank-1.12.0(bioc 3.23)

massspectrometryannotationhubsoftware

3.30 score 1 stars 1 scripts 298 downloads 0 exports 108 dependencies

Last updated from:e0dbabf908. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE212
linux-devel-x86_64OK365
source / vignettesOK394
linux-release-x86_64OK410
macos-release-arm64OK202
macos-oldrel-arm64OK191
windows-develOK290
windows-releaseOK278
windows-oldrelOK297
wasm-releaseOK168

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsBiostringsbitbit64bitopsblobcachemcallrcigarilloclicodetoolscommonmarkcpp11crayoncurlDBIdbplyrDelayedArraydplyrevaluatefastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigpngprocessxpspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrSeqinfosnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryaml

MassBank Data for AnnotationHub

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2023-03-29
Started: 2022-08-30