Package: AHMassBank 1.7.1

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.7.1.tar.gz
AHMassBank_1.7.1.zip(r-4.5)AHMassBank_1.7.1.zip(r-4.4)AHMassBank_1.7.1.zip(r-4.3)
AHMassBank_1.7.1.tgz(r-4.5-any)AHMassBank_1.7.1.tgz(r-4.4-any)AHMassBank_1.7.1.tgz(r-4.3-any)
AHMassBank_1.7.1.tar.gz(r-4.5-noble)AHMassBank_1.7.1.tar.gz(r-4.4-noble)
AHMassBank_1.7.1.tgz(r-4.4-emscripten)AHMassBank_1.7.1.tgz(r-4.3-emscripten)
AHMassBank.pdf |AHMassBank.html
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.7.1(bioc 3.21)AHMassBank-1.6.1(bioc 3.20)

massspectrometryannotationhubsoftware

3.48 score 1 stars 210 downloads 0 exports 114 dependencies

Last updated 1 months agofrom:948955c456. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-winOKMar 28 2025
R-4.5-macOKMar 28 2025
R-4.5-linuxOKMar 28 2025
R-4.4-winOKMar 28 2025
R-4.4-macOKMar 28 2025
R-4.4-linuxOKMar 28 2025
R-4.3-winOKMar 28 2025
R-4.3-macOKMar 28 2025

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsbiomaRtBiostringsbitbit64bitopsblobcachemcallrclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrevaluatefansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhmshttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprocessxprogresspspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrsnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryaml

MassBank Data for AnnotationHub

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2023-03-29
Started: 2022-08-30