Package: AHMassBank 1.7.0

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.7.0.tar.gz
AHMassBank_1.7.0.zip(r-4.5)AHMassBank_1.7.0.zip(r-4.4)AHMassBank_1.7.0.zip(r-4.3)
AHMassBank_1.7.0.tgz(r-4.4-any)AHMassBank_1.7.0.tgz(r-4.3-any)
AHMassBank_1.7.0.tar.gz(r-4.5-noble)AHMassBank_1.7.0.tar.gz(r-4.4-noble)
AHMassBank_1.7.0.tgz(r-4.4-emscripten)AHMassBank_1.7.0.tgz(r-4.3-emscripten)
AHMassBank.pdf |AHMassBank.html
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.7.0(bioc 3.21)AHMassBank-1.6.0(bioc 3.20)

massspectrometryannotationhubsoftware

3.30 score 1 stars 128 downloads 0 exports 115 dependencies

Last updated 2 months agofrom:4e9a223181. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winOKDec 18 2024
R-4.5-linuxOKDec 18 2024
R-4.4-winOKDec 18 2024
R-4.4-macOKDec 18 2024
R-4.3-winOKDec 18 2024
R-4.3-macOKDec 18 2024

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsbiomaRtBiostringsbitbit64bitopsblobcachemcallrclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrevaluatefansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhmshttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigplogrpngprettyunitsprocessxprogresspspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrsnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryamlzlibbioc

MassBank Data for AnnotationHub

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2023-03-29
Started: 2022-08-30