Package: AGDEX 1.55.0
Cuilan lani Gao
AGDEX: Agreement of Differential Expression Analysis
A tool to evaluate agreement of differential expression for cross-species genomics
Authors:
AGDEX_1.55.0.tar.gz
AGDEX_1.55.0.zip(r-4.5)AGDEX_1.55.0.zip(r-4.4)AGDEX_1.55.0.zip(r-4.3)
AGDEX_1.55.0.tgz(r-4.4-any)AGDEX_1.55.0.tgz(r-4.3-any)
AGDEX_1.55.0.tar.gz(r-4.5-noble)AGDEX_1.55.0.tar.gz(r-4.4-noble)
AGDEX_1.55.0.tgz(r-4.4-emscripten)AGDEX_1.55.0.tgz(r-4.3-emscripten)
AGDEX.pdf |AGDEX.html✨
AGDEX/json (API)
| # Install 'AGDEX' in R: |
| install.packages('AGDEX', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- agdex.res - Saved result returned by agdex
- gset.data - A sample gene-set data
- human.data - Sample ExpressionSet object of human data
- map.data - Probe-set Mapping Data
- mouse.data - Mouse Data
On BioConductor:AGDEX-1.55.0(bioc 3.21)AGDEX-1.54.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraygeneticsgeneexpression
Last updated 2 months agofrom:8b303095fe. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | NOTE | Nov 29 2024 |
| R-4.5-linux | NOTE | Nov 29 2024 |
| R-4.4-win | NOTE | Nov 29 2024 |
| R-4.4-mac | NOTE | Nov 29 2024 |
| R-4.3-win | NOTE | Nov 29 2024 |
| R-4.3-mac | NOTE | Nov 29 2024 |
Exports:agdexagdex.scatterplotget.gset.result.detailsmake.dex.set.objectread.agdex.gset.detailsread.agdex.resultwrite.agdex.gset.detailswrite.agdex.result
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphGSEABasehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Agreement of differential expression analysis | AGDEX-package |
| Agreement of Differential Expression Analysis | agdex |
| Saved result returned by agdex() | agdex.res |
| scatter plot of AGDEX result | agdex.scatterplot |
| Extract gene-level details from gene-set results | get.gset.result.details |
| a sample gene-set data | gset.data |
| Sample ExpressionSet object of human data | human.data |
| Make a list object for function agdex() | make.dex.set.object |
| Probe-set Mapping Data | map.data |
| Mouse Data | mouse.data |
| read detailed results of gene-set analyses | read.agdex.gset.details |
| Read the output file of agdex analysis | read.agdex.result |
| write the output of get.gset.result.details to a tab-delimited text file. | write.agdex.gset.details |
| Write the AGDEX results to output file | write.agdex.result |