Package: ABSSeq 1.59.0
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Wentao Yang
ABSSeq: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.
Authors:
ABSSeq_1.59.0.tar.gz
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ABSSeq.pdf |ABSSeq.html✨
ABSSeq/json (API)
NEWS
# Install 'ABSSeq' in R: |
install.packages('ABSSeq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- simuN5 - Simulated study with random outliers
On BioConductor:ABSSeq-1.59.0(bioc 3.20)ABSSeq-1.58.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:dc098947cf
Exports:ABSDataSetABSSeqABSSeqlmaFoldcomplexDesigncallDEscallParametercallParameterwithoutReplicatescountscounts<-estimateSizeFactorsForMatrixexcountsexcounts<-genAFoldgroupsgroups<-LevelstoNormFCLevelstoNormFC<-maxRatesmaxRates<-minimalDispersionminimalDispersion<-minRatesminRates<-normalFactorsnormMethodnormMethod<-pairedpaired<-plotDifftoBaseqtotalNormalizedReplaceOutliersByMADresultssFactorssFactors<-