Package: wiggleplotr 1.37.0

Kaur Alasoo

wiggleplotr: Make read coverage plots from BigWig files

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

Authors:Kaur Alasoo [aut, cre]

wiggleplotr_1.37.0.tar.gz
wiggleplotr_1.37.0.zip(r-4.7)wiggleplotr_1.37.0.zip(r-4.6)wiggleplotr_1.37.0.zip(r-4.5)
wiggleplotr_1.37.0.tgz(r-4.6-any)wiggleplotr_1.37.0.tgz(r-4.5-any)
wiggleplotr_1.37.0.tar.gz(r-4.7-any)wiggleplotr_1.37.0.tar.gz(r-4.6-any)
wiggleplotr_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wiggleplotr/json (API)
NEWS

# Install 'wiggleplotr' in R:
install.packages('wiggleplotr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:wiggleplotr-1.37.0(bioc 3.24)wiggleplotr-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologycoveragernaseqchipseqsequencingvisualizationgeneexpressiontranscriptionalternativesplicing

6.51 score 3 packages 36 scripts 532 downloads 4 mentions 10 exports 76 dependencies

Last updated from:fc07c2398b. Checks:6 WARNING, 2 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING257
linux-devel-x86_64ERROR366
source / vignettesOK349
linux-release-x86_64WARNING353
macos-release-arm64WARNING157
macos-oldrel-arm64WARNING132
windows-develERROR234
windows-releaseWARNING200
windows-oldrelWARNING221
wasm-releaseOK212

Exports:extractCoverageDatagetGenotypePalettemakeManhattanPlotplotCoverageplotCoverageDataplotCoverageFromEnsembldbplotCoverageFromUCSCplotTranscriptsplotTranscriptsFromEnsembldbplotTranscriptsFromUCSC

Dependencies:abindaskpassassertthatBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscowplotcpp11crayoncurlDelayedArraydplyrfarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryaml

Introduction to wiggleplotr

Kaur Alasoo

Rendered fromwiggleplotr.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-03-18
Started: 2017-01-07