Package: waddR 1.19.0
![](https://r-universe.dev/static/nobody.jpg)
Julian Flesch
waddR: Statistical tests for detecting differential distributions based on the 2-Wasserstein distance
The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as well as a specifically tailored test for differential expression in single-cell RNA sequencing data.
Authors:
waddR_1.19.0.tar.gz
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waddR.pdf |waddR.html✨
waddR/json (API)
NEWS
# Install 'waddR' in R: |
install.packages('waddR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/goncalves-lab/waddr/issues
On BioConductor:waddR-1.19.0(bioc 3.20)waddR-1.18.0(bioc 3.19)
Last updated 2 months agofrom:fa897d5c9c
Exports:permutationssquared_wass_approxsquared_wass_decomptestZeroeswasserstein_metricwasserstein.scwasserstein.test
Dependencies:abindarmaskpassBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobbootcachemclicodacodetoolscolorspacecpp11crayoncurlDBIdbplyrDelayedArraydplyrEnvStatsevafansifarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclelme4magrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminqamunsellnlmenloptrnortestopensslpillarpkgconfigplogrpurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangRSQLiteS4ArraysS4VectorsscalesSingleCellExperimentsnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
The waddR package
Rendered fromwaddR.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2023-05-31
Started: 2019-08-06
2-Wasserstein distance calculation
Rendered fromwasserstein_metric.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2020-04-03
Started: 2019-08-06
Detection of differential gene expression distributions in single-cell RNA sequencing data
Rendered fromwasserstein_singlecell.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2020-04-06
Started: 2019-08-06
Two-sample tests based on the 2-Wasserstein distance
Rendered fromwasserstein_test.Rmd
usingknitr::rmarkdown
on Jun 25 2024.Last update: 2020-04-03
Started: 2019-08-06