Package: unifiedWMWqPCR 1.41.0
Joris Meys
unifiedWMWqPCR: Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR data. This modified test allows for testing differential expression in qPCR data.
Authors:
unifiedWMWqPCR_1.41.0.tar.gz
unifiedWMWqPCR_1.41.0.zip(r-4.5)unifiedWMWqPCR_1.41.0.zip(r-4.4)unifiedWMWqPCR_1.41.0.zip(r-4.3)
unifiedWMWqPCR_1.41.0.tgz(r-4.4-any)unifiedWMWqPCR_1.41.0.tgz(r-4.3-any)
unifiedWMWqPCR_1.41.0.tar.gz(r-4.5-noble)unifiedWMWqPCR_1.41.0.tar.gz(r-4.4-noble)
unifiedWMWqPCR_1.41.0.tgz(r-4.4-emscripten)unifiedWMWqPCR_1.41.0.tgz(r-4.3-emscripten)
unifiedWMWqPCR.pdf |unifiedWMWqPCR.html✨
unifiedWMWqPCR/json (API)
NEWS
| # Install 'unifiedWMWqPCR' in R: |
| install.packages('unifiedWMWqPCR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:unifiedWMWqPCR-1.41.0(bioc 3.20)unifiedWMWqPCR-1.40.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:ced73006fc
Exports:as.matrixcoefesttypeforestplotgetEstimategetOrdergroupinfohousekeepingis.unsortedlogoroddsRatioorderorderedByplotpvalrefsesorttypeunorderuWMWvcovvolcanoplotzval
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerbitopscaToolsgplotsgtoolsHTqPCRKernSmoothlimmapreprocessCoreRColorBrewerstatmodzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Unified Wilcoxon-Mann Whitney Test for qPCR data. | unifiedWMWqPCR-package unifiedWMWqPCR uWMWqPCR |
| S3 method as.matrix for uwmwEstimate objects. | as.matrix,uwmwEstimate-method as.matrix.uwmwEstimate |
| S3 method as.matrix for uwmwRes objects. | as.matrix,uwmwRes-method as.matrix.uwmwRes |
| Making a forest plot of the results of uWMW | forestplot forestplot,ANY-method forestplot,uwmwEstimate-method forestplot,uwmwRes-method forestplot.internal |
| Extract logor, or, odds and percentages from a uwmwRes object | getEstimate getEstimate,uwmwRes-method |
| Documentation for the dataset NBdata | NBdata NBgroups NBmat |
| Quick forest plot of significantly up- and downregulated features. | plot,uwmwRes,ANY-method |
| Extract info from uwmwRes and uwmwEstimate objects | coef coef,uwmwRes-method esttype esttype,uwmwEstimate-method getOrder getOrder,uwmwRes-method groupinfo groupinfo,uwmwEstimate-method groupinfo,uwmwRes-method housekeeping housekeeping,uwmwEstimate-method housekeeping,uwmwRes-method is.unsorted is.unsorted,uwmwRes-method length,uwmwEstimate-method length,uwmwRes-method logor logor,uwmwRes-method names,uwmwEstimate-method names,uwmwRes-method oddsRatio oddsRatio,uwmwRes-method orderedBy orderedBy,uwmwEstimate-method orderedBy,uwmwRes-method pval pval,uwmwRes-method ref ref,uwmwEstimate-method se se,uwmwEstimate-method se,uwmwRes-method type type,uwmwEstimate-method type,uwmwRes-method uwmw_Accessors vcov vcov,uwmwRes-method zval zval,uwmwRes-method |
| Sort and order method for uWMWRes objects | order,uwmwRes-method sort sort,uwmwRes-method unorder unorder,ANY-method unorder,uwmwRes-method |
| Extract data from uwmwRes and uwmwEstimate objects. | uwmw_Extract [,uwmwEstimate,ANY-method [,uwmwEstimate,character-method [,uwmwRes,ANY-method [,uwmwRes,character-method |
| The unified Wilcoxon-Mann-Whitney test for qPCR data | uWMW uWMW,data.frame-method uWMW,matrix-method uWMW,qPCRset-method |
| The class uwmwEstimate | uwmwEstimate uwmwEstimate-class |
| Class uwmwRes | uwmwRes uwmwRes-class |
| Parameters used for the function volcanoplot | volcano-par volcanopar volcanoplot-par volcanoplotpar |
| Make a volcano plot of the outcome of a uWMW test | volcanoplot volcanoplot,MArrayLM-method volcanoplot,matrix-method volcanoplot,numeric-method volcanoplot,uwmwRes-method |
