Introduction | Usage | Graphical tools | Additional information
Package: unifiedWMWqPCR 1.49.0
Joris Meys
unifiedWMWqPCR: Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR data. This modified test allows for testing differential expression in qPCR data.
Authors:
unifiedWMWqPCR_1.49.0.tar.gz
unifiedWMWqPCR_1.49.0.zip(r-4.7)unifiedWMWqPCR_1.49.0.zip(r-4.6)unifiedWMWqPCR_1.49.0.zip(r-4.5)
unifiedWMWqPCR_1.49.0.tgz(r-4.6-any)unifiedWMWqPCR_1.49.0.tgz(r-4.5-any)
unifiedWMWqPCR_1.49.0.tar.gz(r-4.7-any)unifiedWMWqPCR_1.49.0.tar.gz(r-4.6-any)
unifiedWMWqPCR_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
unifiedWMWqPCR/json (API)
| # Install 'unifiedWMWqPCR' in R: |
| install.packages('unifiedWMWqPCR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
On BioConductor:unifiedWMWqPCR-1.49.0(bioc 3.24)unifiedWMWqPCR-1.48.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
differentialexpressiongeneexpressionmicrotitreplateassaymultiplecomparisonqualitycontrolsoftwarevisualizationqpcr
Last updated from:a0757eb6d6. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 143 | ||
| linux-devel-x86_64 | OK | 185 | ||
| source / vignettes | OK | 167 | ||
| linux-release-x86_64 | OK | 187 | ||
| macos-release-arm64 | OK | 110 | ||
| macos-oldrel-arm64 | OK | 97 | ||
| windows-devel | OK | 76 | ||
| windows-release | OK | 79 | ||
| windows-oldrel | OK | 86 | ||
| wasm-release | OK | 95 |
Exports:as.matrixcoefesttypeforestplotgetEstimategetOrdergroupinfohousekeepingis.unsortedlogoroddsRatioorderorderedByplotpvalrefsesorttypeunorderuWMWvcovvolcanoplotzval
Dependencies:BiocGenericsgenericslimmastatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Unified Wilcoxon-Mann Whitney Test for qPCR data. | unifiedWMWqPCR-package unifiedWMWqPCR uWMWqPCR |
| S3 method as.matrix for uwmwEstimate objects. | as.matrix,uwmwEstimate-method as.matrix.uwmwEstimate |
| S3 method as.matrix for uwmwRes objects. | as.matrix,uwmwRes-method as.matrix.uwmwRes |
| Making a forest plot of the results of uWMW | forestplot forestplot,ANY-method forestplot,uwmwEstimate-method forestplot,uwmwRes-method forestplot.internal |
| Extract logor, or, odds and percentages from a uwmwRes object | getEstimate getEstimate,uwmwRes-method |
| Documentation for the dataset NBdata | NBdata NBgroups NBmat |
| Quick forest plot of significantly up- and downregulated features. | plot,uwmwRes,ANY-method plot,uwmwRes-method |
| Extract info from uwmwRes and uwmwEstimate objects | coef coef,uwmwRes-method esttype esttype,uwmwEstimate-method getOrder getOrder,uwmwRes-method groupinfo groupinfo,uwmwEstimate-method groupinfo,uwmwRes-method housekeeping housekeeping,uwmwEstimate-method housekeeping,uwmwRes-method is.unsorted is.unsorted,uwmwRes-method length,uwmwEstimate-method length,uwmwRes-method logor logor,uwmwRes-method names,uwmwEstimate-method names,uwmwRes-method oddsRatio oddsRatio,uwmwRes-method orderedBy orderedBy,uwmwEstimate-method orderedBy,uwmwRes-method pval pval,uwmwRes-method ref ref,uwmwEstimate-method se se,uwmwEstimate-method se,uwmwRes-method type type,uwmwEstimate-method type,uwmwRes-method uwmw_Accessors vcov vcov,uwmwRes-method zval zval,uwmwRes-method |
| Sort and order method for uWMWRes objects | order,uwmwRes-method sort sort,uwmwRes-method unorder unorder,ANY-method unorder,uwmwRes-method |
| Extract data from uwmwRes and uwmwEstimate objects. | uwmw_Extract [,uwmwEstimate,ANY-method [,uwmwEstimate,character-method [,uwmwRes,ANY-method [,uwmwRes,character-method |
| The unified Wilcoxon-Mann-Whitney test for qPCR data | uWMW uWMW,data.frame-method uWMW,matrix-method |
| The class uwmwEstimate | uwmwEstimate uwmwEstimate-class |
| Class uwmwRes | uwmwRes uwmwRes-class |
| Parameters used for the function volcanoplot | volcano-par volcanopar volcanoplot-par volcanoplotpar |
| Make a volcano plot of the outcome of a uWMW test | volcanoplot volcanoplot,MArrayLM-method volcanoplot,matrix-method volcanoplot,numeric-method volcanoplot,uwmwRes-method |
