Package: uncoverappLib 1.17.0

Emanuela Iovino

uncoverappLib: Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.

Authors:Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]

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uncoverappLib.pdf |uncoverappLib.html✨
uncoverappLib/json (API)
NEWS

# Install 'uncoverappLib' in R:
install.packages('uncoverappLib', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/manuelaio/uncoverapplib/issues

On BioConductor:uncoverappLib-1.17.0(bioc 3.21)uncoverappLib-1.16.0(bioc 3.20)

softwarevisualizationannotationcoverage

4.48 score 3 stars 4 scripts 188 downloads 4 exports 179 dependencies

Last updated 2 months agofrom:cfd7ff6eb2. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 27 2024
R-4.5-winNOTENov 27 2024
R-4.5-linuxNOTEDec 27 2024
R-4.4-winNOTENov 27 2024
R-4.4-macNOTEDec 27 2024
R-4.3-winNOTENov 27 2024
R-4.3-macNOTEDec 27 2024

Exports:buildInputgetAnnotationFilesrun.uncoverappuncoverAPP

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercodetoolscolorspacecommonmarkcondformatcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrDTEnsDb.Hsapiens.v75EnsDb.Hsapiens.v86ensembldbevaluatefansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2glueGO.dbgraphgridExtragtableGvizhighrHmischmsHomo.sapienshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrmarkdownMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslopenxlsxorg.Hs.eg.dbOrganismDbipillarpkgconfigplogrpngprettyunitsprocessxprogresspromisesProtGenericspspurrrR6rappdirsRBGLRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrlistrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalesshinyshinyBSshinycssloadersshinyjsshinyWidgetssnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexTxDb.Hsapiens.UCSC.hg19.knownGeneTxDb.Hsapiens.UCSC.hg38.knownGenetxdbmakerUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2xtableXVectoryamlzipzlibbioc

uncoverappLib: a R shiny package containing unCOVERApp an interactive graphical application for clinical assessment of sequence coverage at the base-pair level

Emanuela Iovino , Tommaso Pippucci

Rendered fromuncoverappLib.Rmdusingknitr::rmarkdownon Dec 27 2024.

Last update: 2022-10-31
Started: 2020-05-25