Package: tximport 1.35.0
Michael Love
tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
Authors:
tximport_1.35.0.tar.gz
tximport_1.35.0.zip(r-4.5)tximport_1.35.0.zip(r-4.4)tximport_1.35.0.zip(r-4.3)
tximport_1.35.0.tgz(r-4.5-any)tximport_1.35.0.tgz(r-4.4-any)tximport_1.35.0.tgz(r-4.3-any)
tximport_1.35.0.tar.gz(r-4.5-noble)tximport_1.35.0.tar.gz(r-4.4-noble)
tximport_1.35.0.tgz(r-4.4-emscripten)tximport_1.35.0.tgz(r-4.3-emscripten)
tximport.pdf |tximport.html✨
tximport/json (API)
NEWS
| # Install 'tximport' in R: |
| install.packages('tximport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thelovelab/tximport/issues
On BioConductor:tximport-1.35.0(bioc 3.21)tximport-1.34.0(bioc 3.20)
dataimportpreprocessingrnaseqtranscriptomicstranscriptiongeneexpressionimmunooncologybioconductordeseq2
Last updated 4 months agofrom:6275b97d14. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 02 2025 |
| R-4.5-win | OK | Feb 02 2025 |
| R-4.5-mac | OK | Feb 02 2025 |
| R-4.5-linux | OK | Feb 02 2025 |
| R-4.4-win | OK | Feb 02 2025 |
| R-4.4-mac | OK | Feb 02 2025 |
| R-4.3-win | OK | Feb 02 2025 |
| R-4.3-mac | OK | Feb 02 2025 |
Exports:makeCountsFromAbundancesummarizeToGenetximport
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tximport package: import transcript-level quantification data | tximport-package |
| Low-level function to make counts from abundance using matrices | makeCountsFromAbundance |
| Summarize estimated quantitites to gene-level | summarizeToGene summarizeToGene,list-method |
| Import transcript-level abundances and counts for transcript- and gene-level analysis packages | tximport |
