Package: tximeta 1.31.2

Michael Love

tximeta: Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and other quantifiers with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

Authors:Michael Love [aut, cre], Charlotte Soneson [aut, ctb], Peter Hickey [aut, ctb], Rob Patro [aut, ctb], NIH NHGRI [fnd], CZI [fnd]

tximeta_1.31.2.tar.gz
tximeta_1.31.2.zip(r-4.7)tximeta_1.31.2.zip(r-4.6)tximeta_1.31.2.zip(r-4.5)
tximeta_1.31.2.tgz(r-4.6-any)tximeta_1.31.2.tgz(r-4.5-any)
tximeta_1.31.2.tar.gz(r-4.7-any)tximeta_1.31.2.tar.gz(r-4.6-any)
tximeta_1.31.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tximeta/json (API)
NEWS

# Install 'tximeta' in R:
install.packages('tximeta', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thelovelab/tximeta/issues

Pkgdown/docs site:https://thelovelab.github.io

On BioConductor:tximeta-1.31.0(bioc 3.24)tximeta-1.30.0(bioc 3.23)

annotationgenomeannotationdataimportpreprocessingrnaseqlongreadsinglecelltranscriptomicstranscriptiongeneexpressionfunctionalgenomicsreproducibleresearchreportwritingimmunooncology

11.30 score 72 stars 1 packages 584 scripts 2.8k downloads 11 mentions 17 exports 99 dependencies

Last updated from:d9a028e53c. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR272
linux-devel-x86_64WARNING701
source / vignettesOK481
linux-release-x86_64WARNING646
macos-release-arm64WARNING454
macos-oldrel-arm64WARNING419
windows-develWARNING617
windows-releaseWARNING664
windows-oldrelWARNING554
wasm-releaseOK228

Exports:addCDSaddExonsaddIdsgetTximetaBFCimportDatainspectDigestsloadLinkedTxomemakeDGEListmakeLinkedTxomemakeLinkedTxpDataretrieveCDNAretrieveDbsetTximetaBFCsplitSEsummarizeToGenetximetaupdateMetadata

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrensembldbfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogressProtGenericspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakertximportUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

tximeta: transcript quantification import with automatic metadata

Michael I. Love, Charlotte Soneson, Peter F. Hickey, Rob Patro

Rendered fromtximeta.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2026-05-27
Started: 2018-07-12