Package: tracktables 1.41.0

Tom Carroll

tracktables: Build IGV tracks and HTML reports

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Authors:Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

tracktables_1.41.0.tar.gz
tracktables_1.41.0.zip(r-4.5)tracktables_1.41.0.zip(r-4.4)tracktables_1.41.0.zip(r-4.3)
tracktables_1.41.0.tgz(r-4.4-any)tracktables_1.41.0.tgz(r-4.3-any)
tracktables_1.41.0.tar.gz(r-4.5-noble)tracktables_1.41.0.tar.gz(r-4.4-noble)
tracktables_1.41.0.tgz(r-4.4-emscripten)tracktables_1.41.0.tgz(r-4.3-emscripten)
tracktables.pdf |tracktables.html✨
tracktables/json (API)
NEWS

# Install 'tracktables' in R:
install.packages('tracktables', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:tracktables-1.41.0(bioc 3.21)tracktables-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingreportwriting

3.87 score 37 scripts 278 downloads 6 exports 48 dependencies

Last updated 23 days agofrom:9970f638f6. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:igvParammakebedtableMakeIGVSampleMetadataMakeIGVSessionMakeIGVSessionXMLmaketracktable

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelambda.rlifecyclemagrittrmimeopenssloreR6RColorBrewerRcppreportrRhtslibrlangRNiftiRsamtoolsS4Vectorsshadessnowstringistringrsystractor.baseUCSC.utilsvctrsXMLXVectorzlibbioc

Creating IGV HTML reports with tracktables

Rendered fromtracktables.Rnwusingknitr::knitron Oct 31 2024.

Last update: 2014-10-12
Started: 2014-10-08