Package: tracktables 1.41.0

Tom Carroll

tracktables: Build IGV tracks and HTML reports

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Authors:Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

tracktables_1.41.0.tar.gz
tracktables_1.41.0.zip(r-4.5)tracktables_1.41.0.zip(r-4.4)tracktables_1.41.0.zip(r-4.3)
tracktables_1.41.0.tgz(r-4.4-any)tracktables_1.41.0.tgz(r-4.3-any)
tracktables_1.41.0.tar.gz(r-4.5-noble)tracktables_1.41.0.tar.gz(r-4.4-noble)
tracktables_1.41.0.tgz(r-4.4-emscripten)tracktables_1.41.0.tgz(r-4.3-emscripten)
tracktables.pdf |tracktables.html✨
tracktables/json (API)
NEWS

# Install 'tracktables' in R:
install.packages('tracktables', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:tracktables-1.41.0(bioc 3.21)tracktables-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingreportwriting

3.87 score 37 scripts 300 downloads 6 exports 47 dependencies

Last updated 3 months agofrom:9970f638f6. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 16 2025
R-4.5-winWARNINGJan 16 2025
R-4.5-linuxWARNINGJan 16 2025
R-4.4-winWARNINGJan 16 2025
R-4.4-macWARNINGJan 16 2025
R-4.3-winWARNINGJan 16 2025
R-4.3-macWARNINGJan 16 2025

Exports:igvParammakebedtableMakeIGVSampleMetadataMakeIGVSessionMakeIGVSessionXMLmaketracktable

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelambda.rlifecyclemagrittrmimeopenssloreR6RColorBrewerRcppreportrRhtslibrlangRNiftiRsamtoolsS4Vectorsshadessnowstringistringrsystractor.baseUCSC.utilsvctrsXMLXVector

Creating IGV HTML reports with tracktables

Rendered fromtracktables.Rnwusingknitr::knitron Jan 16 2025.

Last update: 2014-10-12
Started: 2014-10-08