Package: tpSVG 1.9.0

Boyi Guo

tpSVG: Thin plate models to detect spatially variable genes

The goal of `tpSVG` is to detect and visualize spatial variation in the gene expression for spatially resolved transcriptomics data analysis. Specifically, `tpSVG` introduces a family of count-based models, with generalizable parametric assumptions such as Poisson distribution or negative binomial distribution. In addition, comparing to currently available count-based model for spatially resolved data analysis, the `tpSVG` models improves computational time, and hence greatly improves the applicability of count-based models in SRT data analysis.

Authors:Boyi Guo [aut, cre], Lukas M. Weber [ctb], Stephanie C. Hicks [aut]

tpSVG_1.9.0.tar.gz
tpSVG_1.9.0.zip(r-4.7)tpSVG_1.9.0.zip(r-4.6)tpSVG_1.9.0.zip(r-4.5)
tpSVG_1.9.0.tgz(r-4.6-any)tpSVG_1.9.0.tgz(r-4.5-any)
tpSVG_1.9.0.tar.gz(r-4.7-any)tpSVG_1.9.0.tar.gz(r-4.6-any)
tpSVG_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
tpSVG/json (API)
NEWS

# Install 'tpSVG' in R:
install.packages('tpSVG', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/boyiguo1/tpsvg/issues

On BioConductor:tpSVG-1.9.0(bioc 3.24)tpSVG-1.8.0(bioc 3.23)

spatialtranscriptomicsgeneexpressionsoftwarestatisticalmethoddimensionreductionregressionpreprocessingspatially-resolvespatially-variable-genes

4.30 score 2 stars 7 scripts 232 downloads 1 exports 68 dependencies

Last updated from:7145726ee2. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE214
linux-devel-x86_64WARNING429
source / vignettesOK334
linux-release-x86_64WARNING382
macos-release-arm64WARNING283
macos-oldrel-arm64WARNING236
windows-develWARNING370
windows-releaseWARNING436
windows-oldrelWARNING386
wasm-releaseOK202

Exports:tpSVG

Dependencies:abindaskpassBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemclicodetoolscpp11curlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesgluehttr2IRangeslambda.rlatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvnlmeopensslpillarpkgconfigpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentsnowSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVector

Introduction to tpSVG

Rendered fromintro_to_tpSVG.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-02-28
Started: 2023-04-15