Package: tidyomics 1.3.0

Stefano Mangiola

tidyomics: Easily install and load the tidyomics ecosystem

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Authors:Stefano Mangiola [aut, cre], Michael Love [aut], William Hutchison [aut]

tidyomics_1.3.0.tar.gz
tidyomics_1.3.0.zip(r-4.5)tidyomics_1.3.0.zip(r-4.4)tidyomics_1.3.0.zip(r-4.3)
tidyomics_1.3.0.tgz(r-4.5-any)tidyomics_1.3.0.tgz(r-4.4-any)tidyomics_1.3.0.tgz(r-4.3-any)
tidyomics_1.3.0.tar.gz(r-4.5-noble)tidyomics_1.3.0.tar.gz(r-4.4-noble)
tidyomics_1.3.0.tgz(r-4.4-emscripten)tidyomics_1.3.0.tgz(r-4.3-emscripten)
tidyomics.pdf |tidyomics.html✨
tidyomics/json (API)

# Install 'tidyomics' in R:
install.packages('tidyomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tidyomics/tidyomics/issues

On BioConductor:tidyomics-1.3.0(bioc 3.21)tidyomics-1.2.0(bioc 3.20)

assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicscytometrygenomicstidyverse

6.11 score 64 stars 5 scripts 182 downloads 3 exports 196 dependencies

Last updated 5 months agofrom:b8e3de3804. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winWARNINGFeb 28 2025
R-4.5-macWARNINGFeb 28 2025
R-4.5-linuxWARNINGFeb 28 2025
R-4.4-winWARNINGFeb 28 2025
R-4.4-macWARNINGFeb 28 2025
R-4.3-winWARNINGFeb 28 2025
R-4.3-macWARNINGFeb 28 2025

Exports:tidyomicstidyomics_conflictstidyomics_packages

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsbslibcachemcaToolsclicliprclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngellipsisevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhmshtmltoolshtmlwidgetshttpuvhttricaigraphInteractionSetIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmenullrangesopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrplyrangespngpolyclippreprocessCoreprettyunitsprogressprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLRCurlreadrreshape2restfulrreticulateRhtslibrjsonrlangrmarkdownROCRrprojrootRsamtoolsRSpectrartracklayerRtsneS4ArraysS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidybulktidyrtidyselecttidyseurattidySingleCellExperimenttidySummarizedExperimenttinytexttservicetzdbUCSC.utilsutf8uwotvctrsviridisLitevroomwithrxfunXMLxtableXVectoryamlzoo

Loading the tidyomics ecosystem

William Hutchison

Rendered fromloading-tidyomics.Rmdusingknitr::knitron Feb 28 2025.

Last update: 2024-02-20
Started: 2024-01-04