Package: tidyomics 1.3.0

Stefano Mangiola

tidyomics: Easily install and load the tidyomics ecosystem

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Authors:Stefano Mangiola [aut, cre], Michael Love [aut], William Hutchison [aut]

tidyomics_1.3.0.tar.gz
tidyomics_1.3.0.zip(r-4.5)tidyomics_1.3.0.zip(r-4.4)tidyomics_1.3.0.zip(r-4.3)
tidyomics_1.3.0.tgz(r-4.4-any)tidyomics_1.3.0.tgz(r-4.3-any)
tidyomics_1.3.0.tar.gz(r-4.5-noble)tidyomics_1.3.0.tar.gz(r-4.4-noble)
tidyomics_1.3.0.tgz(r-4.4-emscripten)tidyomics_1.3.0.tgz(r-4.3-emscripten)
tidyomics.pdf |tidyomics.html✨
tidyomics/json (API)

# Install 'tidyomics' in R:
install.packages('tidyomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tidyomics/tidyomics/issues

On BioConductor:tidyomics-1.3.0(bioc 3.21)tidyomics-1.2.0(bioc 3.20)

assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicscytometrygenomicstidyverse

6.63 score 61 stars 5 scripts 168 downloads 3 exports 197 dependencies

Last updated 22 days agofrom:b8e3de3804. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:tidyomicstidyomics_conflictstidyomics_packages

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsbslibcachemcaToolsclicliprclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngellipsisevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhmshtmltoolshtmlwidgetshttpuvhttricaigraphInteractionSetIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmenullrangesopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrplyrangespngpolyclippreprocessCoreprettyunitsprogressprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLRCurlreadrreshape2restfulrreticulateRhtslibrjsonrlangrmarkdownROCRrprojrootRsamtoolsRSpectrartracklayerRtsneS4ArraysS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidybulktidyrtidyselecttidyseurattidySingleCellExperimenttidySummarizedExperimenttinytexttservicetzdbUCSC.utilsutf8uwotvctrsviridisLitevroomwithrxfunXMLxtableXVectoryamlzlibbioczoo

Loading the tidyomics ecosystem

William Hutchison

Rendered fromloading-tidyomics.Rmdusingknitr::knitron Oct 31 2024.

Last update: 2024-02-20
Started: 2024-01-04