Package: tidyomics 1.9.0

Stefano Mangiola

tidyomics: Easily install and load the tidyomics ecosystem

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Authors:Stefano Mangiola [aut, cre], Michael Love [aut], William Hutchison [aut]

tidyomics_1.9.0.tar.gz
tidyomics_1.9.0.zip(r-4.7)tidyomics_1.9.0.zip(r-4.6)tidyomics_1.9.0.zip(r-4.5)
tidyomics_1.9.0.tgz(r-4.6-any)tidyomics_1.9.0.tgz(r-4.5-any)
tidyomics_1.9.0.tar.gz(r-4.7-any)tidyomics_1.9.0.tar.gz(r-4.6-any)
tidyomics_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
tidyomics/json (API)

# Install 'tidyomics' in R:

install.packages('tidyomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tidyomics/tidyomics/issues

On BioConductor:tidyomics-1.9.0(bioc 3.24)tidyomics-1.8.0(bioc 3.23)

assaydomain infrastructure rnaseq differentialexpression geneexpression normalization clustering qualitycontrol sequencing transcription transcriptomics cytometry genomics tidyverse

6.93 score 75 stars 19 scripts 260 downloads 3 exports 196 dependencies

Last updated from:a7fbe5a3f6. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	238
linux-devel-x86_64	NOTE	421
source / vignettes	OK	365
linux-release-x86_64	NOTE	348
macos-release-arm64	NOTE	258
macos-oldrel-arm64	NOTE	298
windows-devel	NOTE	310
windows-release	NOTE	252
windows-oldrel	NOTE	288
wasm-release	OK	191

Exports:tidyomics tidyomics_conflicts tidyomics_packages

Dependencies:abind askpass base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocParallel Biostrings bit bit64 bitops blob bslib cachem caTools cigarillo cli cluster codetools commonmark cowplot cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray deldir digest dotCall64 dplyr dqrng ellipsis evaluate fansi farver fastDummies fastmap filelock fitdistrplus FNN fontawesome formatR fs futile.logger futile.options future future.apply generics GenomicAlignments GenomicRanges ggplot2 ggrepel ggridges globals glue goftest gplots gridExtra gtable gtools here highr htmltools htmlwidgets httpuv httr httr2 ica igraph IRanges irlba isoband jquerylib jsonlite KernSmooth knitr labeling lambda.r later lattice lazyeval lifecycle listenv lmtest magick magrittr MASS Matrix MatrixGenerics matrixStats memoise mime miniUI nlme openssl otel parallelly patchwork pbapply pillar pkgconfig plotly plyr plyranges plyxp png polyclip progressr promises purrr R6 RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppHNSW RcppProgress RcppTOML RCurl reshape2 restfulr reticulate Rhtslib rjson rlang rmarkdown ROCR rprojroot Rsamtools RSpectra RSQLite rtracklayer Rtsne S4Arrays S4Vectors S7 sass scales scattermore sctransform Seqinfo Seurat SeuratObject shiny SingleCellExperiment sitmo snow sourcetools sp spam SparseArray SpatialExperiment spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.univar spatstat.utils stringi stringr SummarizedExperiment survival sys tensor tibble tidygate tidyr tidyselect tidyseurat tidySingleCellExperiment tidySpatialExperiment tidySummarizedExperiment tinytex ttservice utf8 uwot vctrs viridis viridisLite withr xfun XML xtable XVector yaml zoo

Loading the tidyomics ecosystem

Rendered fromloading-tidyomics.Rmdusingknitr::knitr

Last update: 2025-10-26
Started: 2024-01-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
tidyomics	tidyomics
Conflicts between the tidyomics and other packages	tidyomics_conflicts
List all packages loaded by the tidyomics metapackage	tidyomics_packages