Package: tidyomics 1.1.0

Stefano Mangiola

tidyomics: Easily install and load the tidyomics ecosystem

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Authors:Stefano Mangiola [aut, cre], Michael Love [aut], William Hutchison [aut]

tidyomics_1.1.0.tar.gz
tidyomics_1.1.0.zip(r-4.5)tidyomics_1.1.0.zip(r-4.4)tidyomics_1.1.0.zip(r-4.3)
tidyomics_1.1.0.tgz(r-4.4-any)tidyomics_1.1.0.tgz(r-4.3-any)
tidyomics_1.1.0.tar.gz(r-4.5-noble)tidyomics_1.1.0.tar.gz(r-4.4-noble)
tidyomics_1.1.0.tgz(r-4.4-emscripten)tidyomics_1.1.0.tgz(r-4.3-emscripten)
tidyomics.pdf |tidyomics.html✨
tidyomics/json (API)

# Install 'tidyomics' in R:

install.packages('tidyomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tidyomics/tidyomics/issues

On BioConductor:tidyomics-1.1.0(bioc 3.20)tidyomics-1.0.0(bioc 3.19)

bioconductor-package

3 exports 1.08 score 196 dependencies

Last updated 2 months agofrom:37001b55f2

Exports:tidyomics tidyomics_conflicts tidyomics_packages

Dependencies:abind askpass base64enc BH Biobase BiocGenerics BiocIO BiocParallel Biostrings bit bit64 bitops bslib cachem caTools cli clipr cluster codetools colorspace commonmark cowplot cpp11 crayon crosstalk curl data.table DelayedArray deldir digest dotCall64 dplyr dqrng ellipsis evaluate fansi farver fastDummies fastmap fitdistrplus FNN fontawesome formatR fs futile.logger futile.options future future.apply generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicRanges ggplot2 ggrepel ggridges globals glue goftest gplots gridExtra gtable gtools here highr hms htmltools htmlwidgets httpuv httr ica igraph InteractionSet IRanges irlba isoband jquerylib jsonlite KernSmooth knitr labeling lambda.r later lattice lazyeval leiden lifecycle listenv lmtest magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime miniUI munsell nlme nullranges openssl parallelly patchwork pbapply pillar pkgconfig plotly plyr plyranges png polyclip preprocessCore prettyunits progress progressr promises purrr R6 RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppArmadillo RcppEigen RcppHNSW RcppProgress RcppTOML RCurl readr reshape2 restfulr reticulate Rhtslib rjson rlang rmarkdown ROCR rprojroot Rsamtools RSpectra rtracklayer Rtsne S4Arrays S4Vectors sass scales scattermore sctransform Seurat SeuratObject shiny SingleCellExperiment sitmo snow sourcetools sp spam SparseArray spatstat.data spatstat.explore spatstat.geom spatstat.random spatstat.sparse spatstat.utils stringi stringr SummarizedExperiment survival sys tensor tibble tidybulk tidyr tidyselect tidyseurat tidySingleCellExperiment tidySummarizedExperiment tinytex ttservice tzdb UCSC.utils utf8 uwot vctrs viridisLite vroom withr xfun XML xtable XVector yaml zlibbioc zoo

Loading the tidyomics ecosystem

William Hutchison

Rendered fromloading-tidyomics.Rmdusingknitr::knitron Jun 30 2024.

Last update: 2024-02-20
Started: 2024-01-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Conflicts between the tidyomics and other packages	tidyomics_conflicts
List all packages loaded by the tidyomics metapackage	tidyomics_packages