Package: tanggle 1.13.0

Klaus Schliep

tanggle: Visualization of Phylogenetic Networks

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Authors:Klaus Schliep [aut, cre], Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut], Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb]

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tanggle.pdf |tanggle.html✨
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NEWS

# Install 'tanggle' in R:
install.packages('tanggle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/klausvigo/tanggle/issues

On BioConductor:tanggle-1.13.0(bioc 3.21)tanggle-1.12.0(bioc 3.20)

softwarevisualizationphylogeneticsalignmentclusteringmultiplesequencealignmentdataimport

6.40 score 11 stars 38 scripts 144 downloads 5 exports 55 dependencies

Last updated 23 days agofrom:2fc19e5209. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winOKNov 14 2024
R-4.5-linuxOKNov 14 2024
R-4.4-winOKNov 14 2024
R-4.4-macOKNov 14 2024
R-4.3-winOKNov 14 2024
R-4.3-macOKNov 14 2024

Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonet

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfastmatchfsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtableigraphisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkphangornpillarpkgconfigpurrrquadprogR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

tanggle: Visualización de redes filogenéticas con ggplot2

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao-Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette_espanol.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2022-01-13
Started: 2022-01-13

tanggle: Visualization of phylogenetic networks in a ggplot2 framework

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2021-09-07
Started: 2020-11-07