Package: tanggle 1.11.0
tanggle: Visualization of Phylogenetic Networks
Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.
Authors:
tanggle_1.11.0.tar.gz
tanggle_1.11.0.zip(r-4.5)tanggle_1.11.0.zip(r-4.4)tanggle_1.11.0.zip(r-4.3)
tanggle_1.11.0.tgz(r-4.4-any)tanggle_1.11.0.tgz(r-4.3-any)
tanggle_1.11.0.tar.gz(r-4.5-noble)tanggle_1.11.0.tar.gz(r-4.4-noble)
tanggle_1.11.0.tgz(r-4.4-emscripten)tanggle_1.11.0.tgz(r-4.3-emscripten)
tanggle.pdf |tanggle.html✨
tanggle/json (API)
NEWS
# Install 'tanggle' in R: |
install.packages('tanggle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/klausvigo/tanggle/issues
On BioConductor:tanggle-1.11.0(bioc 3.20)tanggle-1.10.0(bioc 3.19)
Last updated 2 months agofrom:e66c1bcf05
Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonet
Dependencies:apeaplotcachemclicolorspacecpp11digestdplyrfansifarverfastmapfastmatchfsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtableigraphisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepatchworkphangornpillarpkgconfigpurrrquadprogR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils
tanggle: Visualización de redes filogenéticas con ggplot2
Rendered fromtanggle_vignette_espanol.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2022-01-13
Started: 2022-01-13
tanggle: Visualization of phylogenetic networks in a ggplot2 framework
Rendered fromtanggle_vignette.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2021-09-07
Started: 2020-11-07
Readme and manuals
Help Manual
Help page | Topics |
---|---|
geom_splitnet | geom_splitnet |
ggevonet | ggevonet |
ggsplitnet | ggsplitnet |
minimize_overlap reduces reticulation lines crossing over in plots | minimize_overlap |
Depth of Nodes | node_depth_evonet |