Package: tanggle 1.19.2

Klaus Schliep

tanggle: Visualization of Phylogenetic Networks

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Authors:Klaus Schliep [aut, cre], Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut], Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb], Joshua Justison [aut]

tanggle_1.19.2.tar.gz
tanggle_1.19.2.zip(r-4.7)tanggle_1.19.2.zip(r-4.6)tanggle_1.19.2.zip(r-4.5)
tanggle_1.19.2.tgz(r-4.6-any)tanggle_1.19.2.tgz(r-4.5-any)
tanggle_1.19.2.tar.gz(r-4.7-any)tanggle_1.19.2.tar.gz(r-4.6-any)
tanggle_1.19.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tanggle/json (API)
NEWS

# Install 'tanggle' in R:
install.packages('tanggle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/klausvigo/tanggle/issues

Pkgdown/docs site:https://klausvigo.github.io

On BioConductor:tanggle-1.19.0(bioc 3.24)tanggle-1.18.0(bioc 3.23)

softwarevisualizationphylogeneticsalignmentclusteringmultiplesequencealignmentdataimportphylogenetic-networks

7.42 score 11 stars 68 scripts 329 downloads 6 exports 77 dependencies

Last updated from:51c1b0519e. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE178
linux-devel-x86_64WARNING192
source / vignettesOK211
linux-release-x86_64WARNING221
macos-release-arm64WARNING125
macos-oldrel-arm64WARNING155
windows-develWARNING148
windows-releaseWARNING121
windows-oldrelWARNING102
wasm-releaseOK135

Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonetswap_hybrid_minor

Dependencies:apeaplotbase64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfastmatchfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmepatchworkphangornpillarpkgconfigpurrrquadprogR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils

tanggle: Visualization of phylogenetic networks in a ggplot2 framework

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette.Rmdusingknitr::rmarkdownon Jun 10 2026.

Last update: 2026-06-10
Started: 2020-11-07

tanggle: Visualización de redes filogenéticas con ggplot2

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao-Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette_espanol.Rmdusingknitr::rmarkdownon Jun 10 2026.

Last update: 2026-06-10
Started: 2022-01-13