Package: tanggle 1.13.0

Klaus Schliep

tanggle: Visualization of Phylogenetic Networks

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Authors:Klaus Schliep [aut, cre], Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut], Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb]

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tanggle.pdf |tanggle.html✨
tanggle/json (API)
NEWS

# Install 'tanggle' in R:
install.packages('tanggle', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/klausvigo/tanggle/issues

Pkgdown site:https://klausvigo.github.io

On BioConductor:tanggle-1.13.0(bioc 3.21)tanggle-1.12.0(bioc 3.20)

softwarevisualizationphylogeneticsalignmentclusteringmultiplesequencealignmentdataimport

6.44 score 11 stars 42 scripts 160 downloads 5 exports 55 dependencies

Last updated 3 months agofrom:2fc19e5209. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 13 2025
R-4.5-winOKJan 13 2025
R-4.5-linuxOKJan 13 2025
R-4.4-winOKJan 13 2025
R-4.4-macOKJan 13 2025
R-4.3-winOKJan 13 2025
R-4.3-macOKJan 13 2025

Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonet

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfastmatchfsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtableigraphisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkphangornpillarpkgconfigpurrrquadprogR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

tanggle: Visualización de redes filogenéticas con ggplot2

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao-Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette_espanol.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2022-01-13
Started: 2022-01-13

tanggle: Visualization of phylogenetic networks in a ggplot2 framework

Klaus Schliep, Marta Vidal-García, Leann Biancani, Francisco Henao Diaz, Eren Ada, Claudia Solís-Lemus

Rendered fromtanggle_vignette.Rmdusingknitr::rmarkdownon Jan 13 2025.

Last update: 2021-09-07
Started: 2020-11-07