Package: tRNAscanImport 1.25.0

Felix G.M. Ernst

tRNAscanImport: Importing a tRNAscan-SE result file as GRanges object

The package imports the result of tRNAscan-SE as a GRanges object.

Authors:Felix G.M. Ernst [aut, cre]

tRNAscanImport_1.25.0.tar.gz
tRNAscanImport_1.25.0.zip(r-4.5)tRNAscanImport_1.25.0.zip(r-4.4)tRNAscanImport_1.25.0.zip(r-4.3)
tRNAscanImport_1.25.0.tgz(r-4.4-any)tRNAscanImport_1.25.0.tgz(r-4.3-any)
tRNAscanImport_1.25.0.tar.gz(r-4.5-noble)tRNAscanImport_1.25.0.tar.gz(r-4.4-noble)
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tRNAscanImport.pdf |tRNAscanImport.html✨
tRNAscanImport/json (API)
NEWS

# Install 'tRNAscanImport' in R:
install.packages('tRNAscanImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/felixernst/trnascanimport/issues

On BioConductor:tRNAscanImport-1.25.0(bioc 3.20)tRNAscanImport-1.24.0(bioc 3.19)

bioconductor-package

5 exports 0.82 score 80 dependencies

Last updated 2 months agofrom:ab3c45c9eb

Exports:get.tRNAprecursorimport.tRNAscanAsGRangesistRNAscanGRangestRNAscan2GFFtRNAscanID

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeclicodetoolscolorspacecpp11crayoncurlDelayedArrayfansifarverformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeModstringsmunsellnlmeopensslpillarpkgconfigR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrStructstringsSummarizedExperimentsystibbletRNAUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc

Importing tRNAscan-SE output as GRanges

Felix G.M. Ernst

Rendered fromtRNAscanImport.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-04-10
Started: 2018-02-10

Readme and manuals

Help Manual

Help pageTopics
Get tRNA precursor sequencesget.tRNAprecursor
Importing a tRNAscan output file as a GRanges objectimport.tRNAscanAsGRanges tRNAscan2GFF tRNAscanID
tRNAscan compatibility checkistRNAscanGRanges istRNAscanGRanges,GRanges-method
tRNAscanImport: Importing tRNAscan-SE output as GRangestRNAscanImport