Introduction | Getting started | Importing as GRanges | Visualization | Getting tRNA precursor sequences | Further reading | Session info | References
Package: tRNAscanImport 1.33.0
Felix G.M. Ernst
tRNAscanImport: Importing a tRNAscan-SE result file as GRanges object
The package imports the result of tRNAscan-SE as a GRanges object.
Authors:
tRNAscanImport_1.33.0.tar.gz
tRNAscanImport_1.33.0.zip(r-4.7)tRNAscanImport_1.33.0.zip(r-4.6)tRNAscanImport_1.33.0.zip(r-4.5)
tRNAscanImport_1.33.0.tgz(r-4.6-any)tRNAscanImport_1.33.0.tgz(r-4.5-any)
tRNAscanImport_1.33.0.tar.gz(r-4.7-any)tRNAscanImport_1.33.0.tar.gz(r-4.6-any)
tRNAscanImport_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tRNAscanImport/json (API)
| # Install 'tRNAscanImport' in R: |
| install.packages('tRNAscanImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/felixernst/trnascanimport/issues
On BioConductor:tRNAscanImport-1.33.0(bioc 3.24)tRNAscanImport-1.32.0(bioc 3.23)
softwaredataimportworkflowsteppreprocessingvisualizationbioconductorsequencesstructurestrnatrnascantrnascan-se
Last updated from:8cd93b4182. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 229 | ||
| linux-devel-x86_64 | OK | 415 | ||
| source / vignettes | OK | 357 | ||
| linux-release-x86_64 | OK | 450 | ||
| macos-release-arm64 | OK | 288 | ||
| macos-oldrel-arm64 | OK | 312 | ||
| windows-devel | OK | 330 | ||
| windows-release | OK | 328 | ||
| windows-oldrel | OK | 334 | ||
| wasm-release | OK | 183 |
Exports:get.tRNAprecursorimport.tRNAscanAsGRangesistRNAscanGRangestRNAscan2GFFtRNAscanID
Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecigarilloclicodetoolscpp11crayoncurlDelayedArrayfarverformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeModstringsopensslR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrStructstringsSummarizedExperimentsystRNAvctrsviridisLitewithrXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get tRNA precursor sequences | get.tRNAprecursor |
| Importing a tRNAscan output file as a GRanges object | import.tRNAscanAsGRanges tRNAscan2GFF tRNAscanID |
| tRNAscan compatibility check | istRNAscanGRanges istRNAscanGRanges,GRanges-method |
| tRNAscanImport: Importing tRNAscan-SE output as GRanges | tRNAscanImport |
