Package: tRNAscanImport 1.27.0

Felix G.M. Ernst

tRNAscanImport: Importing a tRNAscan-SE result file as GRanges object

The package imports the result of tRNAscan-SE as a GRanges object.

Authors:Felix G.M. Ernst [aut, cre]

tRNAscanImport_1.27.0.tar.gz
tRNAscanImport_1.27.0.zip(r-4.5)tRNAscanImport_1.27.0.zip(r-4.4)tRNAscanImport_1.27.0.zip(r-4.3)
tRNAscanImport_1.27.0.tgz(r-4.4-any)tRNAscanImport_1.27.0.tgz(r-4.3-any)
tRNAscanImport_1.27.0.tar.gz(r-4.5-noble)tRNAscanImport_1.27.0.tar.gz(r-4.4-noble)
tRNAscanImport_1.27.0.tgz(r-4.4-emscripten)tRNAscanImport_1.27.0.tgz(r-4.3-emscripten)
tRNAscanImport.pdf |tRNAscanImport.html✨
tRNAscanImport/json (API)
NEWS

# Install 'tRNAscanImport' in R:
install.packages('tRNAscanImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/felixernst/trnascanimport/issues

On BioConductor:tRNAscanImport-1.27.0(bioc 3.21)tRNAscanImport-1.26.0(bioc 3.20)

softwaredataimportworkflowsteppreprocessingvisualizationbioconductorsequencesstructurestrnatrnascantrnascan-se

5.08 score 2 stars 3 scripts 228 downloads 5 exports 81 dependencies

Last updated 2 months agofrom:5910f73103. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-winOKNov 30 2024
R-4.5-linuxOKNov 30 2024
R-4.4-winOKNov 30 2024
R-4.4-macOKNov 30 2024
R-4.3-winOKNov 30 2024
R-4.3-macOKNov 30 2024

Exports:get.tRNAprecursorimport.tRNAscanAsGRangesistRNAscanGRangestRNAscan2GFFtRNAscanID

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeclicodetoolscolorspacecpp11crayoncurlDelayedArrayfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeModstringsmunsellnlmeopensslpillarpkgconfigR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrStructstringsSummarizedExperimentsystibbletRNAUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc

Importing tRNAscan-SE output as GRanges

Felix G.M. Ernst

Rendered fromtRNAscanImport.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2020-04-10
Started: 2018-02-10

Readme and manuals

Help Manual

Help pageTopics
Get tRNA precursor sequencesget.tRNAprecursor
Importing a tRNAscan output file as a GRanges objectimport.tRNAscanAsGRanges tRNAscan2GFF tRNAscanID
tRNAscan compatibility checkistRNAscanGRanges istRNAscanGRanges,GRanges-method
tRNAscanImport: Importing tRNAscan-SE output as GRangestRNAscanImport