Package: tRNAscanImport 1.33.0

Felix G.M. Ernst

tRNAscanImport: Importing a tRNAscan-SE result file as GRanges object

The package imports the result of tRNAscan-SE as a GRanges object.

Authors:Felix G.M. Ernst [aut, cre]

tRNAscanImport_1.33.0.tar.gz
tRNAscanImport_1.33.0.zip(r-4.7)tRNAscanImport_1.33.0.zip(r-4.6)tRNAscanImport_1.33.0.zip(r-4.5)
tRNAscanImport_1.33.0.tgz(r-4.6-any)tRNAscanImport_1.33.0.tgz(r-4.5-any)
tRNAscanImport_1.33.0.tar.gz(r-4.7-any)tRNAscanImport_1.33.0.tar.gz(r-4.6-any)
tRNAscanImport_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tRNAscanImport/json (API)
NEWS

# Install 'tRNAscanImport' in R:
install.packages('tRNAscanImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/felixernst/trnascanimport/issues

On BioConductor:tRNAscanImport-1.33.0(bioc 3.24)tRNAscanImport-1.32.0(bioc 3.23)

softwaredataimportworkflowsteppreprocessingvisualizationbioconductorsequencesstructurestrnatrnascantrnascan-se

5.08 score 2 stars 3 scripts 338 downloads 5 exports 71 dependencies

Last updated from:8cd93b4182. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE221
linux-devel-x86_64OK459
source / vignettesOK328
linux-release-x86_64OK458
macos-release-arm64OK367
macos-oldrel-arm64OK310
windows-develOK426
windows-releaseOK329
windows-oldrelOK348
wasm-releaseOK183

Exports:get.tRNAprecursorimport.tRNAscanAsGRangesistRNAscanGRangestRNAscan2GFFtRNAscanID

Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecigarilloclicodetoolscpp11crayoncurlDelayedArrayfarverformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeModstringsopensslR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrStructstringsSummarizedExperimentsystRNAvctrsviridisLitewithrXMLXVectoryaml

Importing tRNAscan-SE output as GRanges

Felix G.M. Ernst

Rendered fromtRNAscanImport.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2020-04-10
Started: 2018-02-10

Readme and manuals

Help Manual

Help pageTopics
Get tRNA precursor sequencesget.tRNAprecursor
Importing a tRNAscan output file as a GRanges objectimport.tRNAscanAsGRanges tRNAscan2GFF tRNAscanID
tRNAscan compatibility checkistRNAscanGRanges istRNAscanGRanges,GRanges-method
tRNAscanImport: Importing tRNAscan-SE output as GRangestRNAscanImport