Package: svaNUMT 1.13.0

Ruining Dong

svaNUMT: NUMT detection from structural variant calls

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

Authors:Ruining Dong [aut, cre]

svaNUMT_1.13.0.tar.gz
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svaNUMT_1.13.0.tgz(r-4.4-any)svaNUMT_1.13.0.tgz(r-4.3-any)
svaNUMT_1.13.0.tar.gz(r-4.5-noble)svaNUMT_1.13.0.tar.gz(r-4.4-noble)
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svaNUMT.pdf |svaNUMT.html✨
svaNUMT/json (API)
NEWS

# Install 'svaNUMT' in R:

install.packages('svaNUMT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/papenfusslab/svanumt/issues

On BioConductor:svaNUMT-1.13.0(bioc 3.21)svaNUMT-1.12.0(bioc 3.20)

dataimport sequencing annotation genetics variantannotation

5.35 score 3 stars 6 scripts 162 downloads 1 exports 84 dependencies

Last updated 23 days agofrom:1a144f0520. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 18 2024
R-4.5-win	WARNING	Nov 18 2024
R-4.5-linux	WARNING	Nov 18 2024
R-4.4-win	WARNING	Nov 18 2024
R-4.4-mac	WARNING	Nov 18 2024
R-4.3-win	WARNING	Nov 18 2024
R-4.3-mac	WARNING	Nov 18 2024