Package: svaNUMT 1.13.0

Ruining Dong

svaNUMT: NUMT detection from structural variant calls

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

Authors:Ruining Dong [aut, cre]

svaNUMT_1.13.0.tar.gz
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svaNUMT.pdf |svaNUMT.html✨
svaNUMT/json (API)
NEWS

# Install 'svaNUMT' in R:

install.packages('svaNUMT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/papenfusslab/svanumt/issues

On BioConductor:svaNUMT-1.13.0(bioc 3.21)svaNUMT-1.12.0(bioc 3.20)

dataimport sequencing annotation genetics variantannotation

5.35 score 3 stars 6 scripts 190 downloads 1 exports 83 dependencies

Last updated 5 months agofrom:1a144f0520. Checks:1 OK, 8 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 18 2025
R-4.5-win	NOTE	Mar 18 2025
R-4.5-mac	NOTE	Mar 18 2025
R-4.5-linux	NOTE	Mar 18 2025
R-4.4-win	NOTE	Mar 18 2025
R-4.4-mac	NOTE	Mar 18 2025
R-4.4-linux	NOTE	Mar 18 2025
R-4.3-win	NOTE	Mar 18 2025
R-4.3-mac	NOTE	Mar 18 2025