Package: svaNUMT 1.19.0

Ruining Dong

svaNUMT: NUMT detection from structural variant calls

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

Authors:Ruining Dong [aut, cre]

svaNUMT_1.19.0.tar.gz
svaNUMT_1.19.0.zip(r-4.7)svaNUMT_1.19.0.zip(r-4.6)svaNUMT_1.19.0.zip(r-4.5)
svaNUMT_1.19.0.tgz(r-4.6-any)svaNUMT_1.19.0.tgz(r-4.5-any)
svaNUMT_1.19.0.tar.gz(r-4.7-any)svaNUMT_1.19.0.tar.gz(r-4.6-any)
svaNUMT_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
svaNUMT/json (API)

# Install 'svaNUMT' in R:

install.packages('svaNUMT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/papenfusslab/svanumt/issues

On BioConductor:svaNUMT-1.19.0(bioc 3.24)svaNUMT-1.18.0(bioc 3.23)

dataimport sequencing annotation genetics variantannotation

5.50 score 3 stars 14 scripts 294 downloads 1 exports 83 dependencies

Last updated from:66c92cc7b1. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	306
linux-devel-x86_64	NOTE	514
source / vignettes	OK	442
linux-release-x86_64	NOTE	535
macos-release-arm64	NOTE	315
macos-oldrel-arm64	NOTE	383
windows-devel	NOTE	439
windows-release	NOTE	411
windows-oldrel	NOTE	398
wasm-release	OK	268